Aliases for LINC01788 Gene

Subcategory (RNA class) for LINC01788 Gene

lncRNA

Number of RNA Genes sources:

3 / 17

Aliases for LINC01788 Gene

  • Long Intergenic Non-Protein Coding RNA 1788 2 3 5
  • LINC01788 2 5 165
  • NONHSAG001803.2 91
  • HSALNG0004394 164

External Ids for LINC01788 Gene

Summaries for LINC01788 Gene

GeneCards Summary for LINC01788 Gene

LINC01788 (Long Intergenic Non-Protein Coding RNA 1788) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LINC01788 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LINC01788 Gene

Genomics for LINC01788 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for LINC01788 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH01J070706 Promoter 1 Ensembl CraniofacialAtlas 0.7 +3.1 3069 1.3 POLR2A YY1 ZBTB33 TAF1 GTF2F1 EZH2 PTGER3 LINC01788 piR-37663-002 CTH
GH01J070685 Enhancer 1 Ensembl ENCODE 0.4 -18.2 -18189 0.6 CTCF KDM1A ZNF7 JUND REST NR2C1 RAD21 ZNF24 TRIM22 SOX6 LINC01788 CASP3P1 CTH PTGER3
GH01J070674 Enhancer 1.1 Ensembl ENCODE 0.3 -28.0 -27969 1.8 SIX5 LEF1 IKZF1 JUND DDX20 MTA2 PHF21A PKNOX1 ZNF24 MTA1 PTGER3 ZRANB2-AS1 MIR186 ZRANB2 SRSF11 CASP3P1 LINC01788 CTH
GH01J070752 Enhancer 1 Ensembl ENCODE 0.3 +48.5 48514 1.7 RFX1 LEF1 IKZF1 DPF2 HDAC1 SOX6 TCF12 EP300 ZNF184 ZNF766 SRSF11 piR-38717-001 ENSG00000226208 LINC01788 PTGER3 CTH
GH01J070718 Enhancer 0.5 Ensembl 0.4 +16.4 16375 3.3 FOXA1 NR2F2 ESR1 CEBPG JUND TAL1 ATF4 CEBPB ATF2 ENSG00000226208 PTGER3 piR-37663-002 LINC01788 CTH
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC01788 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for LINC01788 Gene

Genomic Locations for LINC01788 Gene
chr1:70,703,690-70,786,531
(GRCh38/hg38)
Size:
82,842 bases
Orientation:
Plus strand
chr1:71,172,136-71,252,151
(GRCh37/hg19)
Size:
80,016 bases
Orientation:
Plus strand

Genomic View for LINC01788 Gene

Genes around LINC01788 on UCSC Golden Path with GeneCards custom track
LINC01788 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
LINC01788 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC01788 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC01788 Gene

Proteins for LINC01788 Gene

Post-translational modifications for LINC01788 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC01788 Gene

Domains & Families for LINC01788 Gene

Gene Families for LINC01788 Gene

genes like me logo Genes that share domains with LINC01788: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC01788 Gene

Function for LINC01788 Gene

Phenotypes From GWAS Catalog for LINC01788 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC01788 Gene

Localization for LINC01788 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC01788 Gene

Pathways & Interactions for LINC01788 Gene

PathCards logo

SuperPathways for LINC01788 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LINC01788 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LINC01788 Gene

Drugs & Compounds for LINC01788 Gene

No Compound Related Data Available

Transcripts for LINC01788 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for LINC01788 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS00005DE670_9606 lncRNA 2086 4

Ensembl: ENST00000419450 (view in UCSC) ,

LncBook: HSALNT0008716,

LNCipedia: LINC01788:7,

NONCODE: NONHSAT003865.2,

URS00007E4B60_9606 lncRNA 2086 2

HGNC: 52577,

RefSeq: NR_125938,

URS0000EEF584_9606 lncRNA 1528 1

Ensembl: ENST00000660283 (view in UCSC) ,

URS0000EF38DB_9606 lncRNA 1374 1

Ensembl: ENST00000664802 (view in UCSC) ,

URS0000EF06CC_9606 lncRNA 603 1

Ensembl: ENST00000663421 (view in UCSC) ,

LINC01788 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for LINC01788 Gene

2 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC01788 Gene

No ASD Table

Relevant External Links for LINC01788 Gene

GeneLoc Exon Structure for
LINC01788

Expression for LINC01788 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for LINC01788

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC01788 Gene

Orthologs for LINC01788 Gene

Evolution for LINC01788 Gene

ENSEMBL:
Gene Tree for LINC01788 (if available)
TreeFam:
Gene Tree for LINC01788 (if available)

No data available for Orthologs for LINC01788 Gene

Paralogs for LINC01788 Gene

No data available for Paralogs for LINC01788 Gene

Variants for LINC01788 Gene

Additional dbSNP identifiers (rs#s) for LINC01788 Gene

Additional Variant Information for LINC01788 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC01788

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for LINC01788 Gene

Disorders for LINC01788 Gene

No disorders were found for LINC01788 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC01788 Gene

Publications for LINC01788 Gene

  1. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3

No data available for Mastermind for LINC01788 Gene

Products for LINC01788 Gene

Sources for LINC01788 Gene