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Aliases for LINC01786 Gene

Subcategory (RNA class) for LINC01786 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for LINC01786 Gene

  • Long Intergenic Non-Protein Coding RNA 1786 2 3 5

External Ids for LINC01786 Gene

Summaries for LINC01786 Gene

GeneCards Summary for LINC01786 Gene

LINC01786 (Long Intergenic Non-Protein Coding RNA 1786) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for LINC01786 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LINC01786 Gene

Genomics for LINC01786 Gene

GeneHancer (GH) Regulatory Elements for LINC01786 Gene

Promoters and enhancers for LINC01786 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH01I001269 Promoter/Enhancer 2.4 EPDnew Ensembl ENCODE dbSUPER 550.8 -1.5 -1510 5.5 PKNOX1 CLOCK ARID4B SIN3A ZNF2 ZBTB7B YY1 SLC30A9 POLR2B ZNF207 UBE2J2 LINC01786 ENSG00000230092 CDK11A ENSG00000237094 INTS11 LOC100288069 LOC100288379 ATAD3B CDK11B
GH01I000998 Promoter/Enhancer 2.3 EPDnew Ensembl ENCODE dbSUPER 30.7 -273.5 -273513 3.8 CLOCK MLX FEZF1 DMAP1 SLC30A9 ZNF213 E2F8 ZNF143 SP3 NFYC ISG15 HES4 ATAD3B ENSG00000230092 WASH7P INTS11 ENSG00000272512 LINC01786 CCNL2 ENSG00000272455
GH01I001373 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE 31.5 +101.1 101121 3.9 CLOCK MLX ZFP64 FEZF1 DMAP1 YBX1 YY1 SLC30A9 ZNF213 E2F8 AURKAIP1 GC01M001374 CDK11A ENSG00000230092 ATAD3B LOC100288379 ENSG00000237094 LINC01786 LOC100288069 CCNL2
GH01I001156 Enhancer 1.6 FANTOM5 Ensembl ENCODE dbSUPER 23.6 -115.6 -115567 4.4 HDGF ATF1 ARID4B ZNF48 POLR2B ZNF766 ATF7 SP5 NCOA1 ZHX2 GC01P001160 LINC01786 TTLL10 ATAD3B LOC105378580 TTLL10-AS1 INTS11 CICP3 UBE2J2 LINC00115
GH01I000939 Promoter/Enhancer 1.5 Ensembl ENCODE 21.8 -331.5 -331547 6.3 HDGF PKNOX1 ARNT SIN3A FEZF1 ZNF2 POLR2B ZNF766 ZNF213 SP3 LINC01786 NOC2L PLEKHN1 ENSG00000241180 SCNN1D ENSG00000215014 FAM87B PERM1 ANKRD65 CDK11A
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around LINC01786 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LINC01786 Gene

Genomic Locations for LINC01786 Gene
chr1:1,274,002-1,280,420
(GRCh38/hg38)
Size:
6,419 bases
Orientation:
Plus strand
chr1:1,210,603-1,215,800
(GRCh37/hg19)

Genomic View for LINC01786 Gene

Genes around LINC01786 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LINC01786 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC01786 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC01786 Gene

Proteins for LINC01786 Gene

Post-translational modifications for LINC01786 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC01786 Gene

Domains & Families for LINC01786 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LINC01786 Gene

Function for LINC01786 Gene

Phenotypes From GWAS Catalog for LINC01786 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC01786 Gene

Localization for LINC01786 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC01786 Gene

Pathways & Interactions for LINC01786 Gene

SuperPathways for LINC01786 Gene

No Data Available

Interacting Proteins for LINC01786 Gene

Gene Ontology (GO) - Biological Process for LINC01786 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LINC01786 Gene

Drugs & Compounds for LINC01786 Gene

No Compound Related Data Available

Transcripts for LINC01786 Gene

mRNA/cDNA for LINC01786 Gene

(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC01786 Gene

No ASD Table

Relevant External Links for LINC01786 Gene

GeneLoc Exon Structure for
LINC01786
ECgene alternative splicing isoforms for
LINC01786

Expression for LINC01786 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC01786 Gene

Orthologs for LINC01786 Gene

Evolution for LINC01786 Gene

ENSEMBL:
Gene Tree for LINC01786 (if available)
TreeFam:
Gene Tree for LINC01786 (if available)

No data available for Orthologs for LINC01786 Gene

Paralogs for LINC01786 Gene

No data available for Paralogs for LINC01786 Gene

Variants for LINC01786 Gene

Sequence variations from dbSNP and Humsavar for LINC01786 Gene

SNP ID Clin Chr 01 pos Variation AA Info Type
rs1000137475 -- 1,273,502(+) G/C upstream_transcript_variant
rs1000472349 -- 1,272,616(+) T/G upstream_transcript_variant
rs1000524309 -- 1,272,324(+) C/T upstream_transcript_variant
rs1000693504 -- 1,277,709(+) T/G intron_variant
rs1000823673 -- 1,276,931(+) T/G intron_variant

Additional Variant Information for LINC01786 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC01786

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for LINC01786 Gene

Disorders for LINC01786 Gene

No disorders were found for LINC01786 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LINC01786 Gene

Publications for LINC01786 Gene

No publications were found for LINC01786 Gene.

Products for LINC01786 Gene

Sources for LINC01786 Gene

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