Aliases for LINC01782 Gene

Subcategory (RNA class) for LINC01782 Gene

lncRNA

Number of RNA Genes sources:

3 / 17

Aliases for LINC01782 Gene

  • Long Intergenic Non-Protein Coding RNA 1782 2 3 5
  • LINC01782 2 5 165
  • NONHSAG025452.2 91
  • HSALNG0125355 164

External Ids for LINC01782 Gene

Summaries for LINC01782 Gene

GeneCards Summary for LINC01782 Gene

LINC01782 (Long Intergenic Non-Protein Coding RNA 1782) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LINC01782 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LINC01782 Gene

Genomics for LINC01782 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for LINC01782 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH19J032104 Enhancer 0.9 Ensembl ENCODE 600.7 +1.5 1515 1.6 ZNF629 PKNOX1 SOX6 ZNF561 TSHZ1 ZSCAN5C OSR2 ZBTB17 ATF2 CTCF ENSG00000267133 LINC01782 ZNF507 THEG5
GH19J032099 Enhancer 0.5 Ensembl ENCODE 0.4 +7.3 7315 1.6 SOX6 ZNF513 ENSG00000267133 LINC01782 lnc-ANKRD27-8 ZNF507 THEG5
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC01782 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for LINC01782 Gene

Genomic Locations for LINC01782 Gene
chr19:32,092,690-32,105,916
(GRCh38/hg38)
Size:
13,227 bases
Orientation:
Minus strand

Genomic View for LINC01782 Gene

Genes around LINC01782 on UCSC Golden Path with GeneCards custom track
LINC01782 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
LINC01782 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC01782 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC01782 Gene

Proteins for LINC01782 Gene

Post-translational modifications for LINC01782 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC01782 Gene

Domains & Families for LINC01782 Gene

Gene Families for LINC01782 Gene

genes like me logo Genes that share domains with LINC01782: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC01782 Gene

Function for LINC01782 Gene

Phenotypes From GWAS Catalog for LINC01782 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC01782 Gene

Localization for LINC01782 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC01782 Gene

Pathways & Interactions for LINC01782 Gene

PathCards logo

SuperPathways for LINC01782 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LINC01782 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LINC01782 Gene

Drugs & Compounds for LINC01782 Gene

No Compound Related Data Available

Transcripts for LINC01782 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for LINC01782 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS00000AB927_9606 lncRNA 2908 4

Ensembl: ENST00000591212 (view in UCSC) ,

LncBook: HSALNT0258441,

LNCipedia: LINC01782:7,

NONCODE: NONHSAT064180.2,

URS000075C9F3_9606 lncRNA 2904 2

HGNC: 52572,

RefSeq: NR_110694,

URS00008B8924_9606 lncRNA 2624 3

LncBook: HSALNT0258437,

LNCipedia: LINC01782:6,

NONCODE: NONHSAT064179.2,

URS00008BB0DE_9606 lncRNA 690 3

LncBook: HSALNT0258446,

LNCipedia: LINC01782:9,

NONCODE: NONHSAT064183.2,

URS0000D5ADD0_9606 lncRNA 2904 1

LNCipedia: LINC01782:8,

LINC01782 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for LINC01782 Gene

1 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC01782 Gene

No ASD Table

Relevant External Links for LINC01782 Gene

GeneLoc Exon Structure for
LINC01782

Expression for LINC01782 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for LINC01782

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC01782 Gene

Orthologs for LINC01782 Gene

Evolution for LINC01782 Gene

ENSEMBL:
Gene Tree for LINC01782 (if available)
TreeFam:
Gene Tree for LINC01782 (if available)

No data available for Orthologs for LINC01782 Gene

Paralogs for LINC01782 Gene

No data available for Paralogs for LINC01782 Gene

Variants for LINC01782 Gene

Additional dbSNP identifiers (rs#s) for LINC01782 Gene

Structural Variations from Database of Genomic Variants (DGV) for LINC01782 Gene

Variant ID Type Subtype PubMed ID
nsv1060207 CNV gain 25217958
nsv833806 CNV gain 17160897

Additional Variant Information for LINC01782 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC01782

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for LINC01782 Gene

Disorders for LINC01782 Gene

No disorders were found for LINC01782 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC01782 Gene

Publications for LINC01782 Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3

No data available for Mastermind for LINC01782 Gene

Products for LINC01782 Gene

Sources for LINC01782 Gene