Aliases for LINC01781 Gene

Subcategory (RNA class) for LINC01781 Gene

lncRNA

Number of RNA Genes sources:

3 / 14

Aliases for LINC01781 Gene

  • Long Intergenic Non-Protein Coding RNA 1781 2 3 5
  • LINC01781 2 168
  • NONHSAG001906 92
  • HSALNG0004694 167

External Ids for LINC01781 Gene

Summaries for LINC01781 Gene

GeneCards Summary for LINC01781 Gene

LINC01781 (Long Intergenic Non-Protein Coding RNA 1781) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LINC01781 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LINC01781 Gene

Genomics for LINC01781 Gene

GeneHancer (GH) Regulatory Elements for LINC01781 Gene

Promoters and enhancers for LINC01781 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH01J080532 Enhancer 0.6 Ensembl 500.7 -1.2 -1238 3.4 ZSCAN5C ZNF316 FOSL2 NFE2 MAFK MAFG SMARCA4 NFE2L2 MAFF JUND LINC01781 ENSG00000234108 ENSG00000224326
GH01J080537 Enhancer 0.2 Ensembl 500.7 +1.2 1162 0.2 LINC01781 piR-42075 ENSG00000224326
GH01J080509 Enhancer 0.5 Ensembl 0.3 -25.6 -25638 0.6 TEAD4 EP300 SP1 JUND MNT KDM1A ENSG00000234108 LINC01781
GH01J080593 Enhancer 0.6 ENCODE 0.2 +58.3 58265 1.9 ZNF217 CTBP1 NR3C1 NEUROD1 GATA3 DPF2 RCOR1 NFIB SETDB1 SMARCE1 piR-49400-003 piR-56186-002 piR-53114-001 LINC01781
GH01J080639 Enhancer 0.9 Ensembl ENCODE 0.1 +104.6 104590 1.7 EP300 TRIM22 BCL11A SRF ARNT MEF2B NBN GATA3 ELF1 IRF4 piR-53114-001 LINC01781 HSALNG0004698
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC01781 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LINC01781 Gene

Genomic Locations for LINC01781 Gene
chr1:80,535,739-80,655,702
(GRCh38/hg38)
Size:
119,964 bases
Orientation:
Plus strand
chr1:81,001,440-81,112,473
(GRCh37/hg19)
Size:
111,034 bases
Orientation:
Plus strand

Genomic View for LINC01781 Gene

Genes around LINC01781 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LINC01781 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC01781 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC01781 Gene

Proteins for LINC01781 Gene

Post-translational modifications for LINC01781 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC01781 Gene

Domains & Families for LINC01781 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC01781 Gene

Function for LINC01781 Gene

Phenotypes From GWAS Catalog for LINC01781 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC01781 Gene

Localization for LINC01781 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC01781 Gene

Pathways & Interactions for LINC01781 Gene

PathCards logo

SuperPathways for LINC01781 Gene

No Data Available
;

Gene Ontology (GO) - Biological Process for LINC01781 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LINC01781 Gene

Drugs & Compounds for LINC01781 Gene

No Compound Related Data Available

Transcripts for LINC01781 Gene

mRNA/cDNA for LINC01781 Gene

12 RNACentral transcripts :
3 REFSEQ mRNAs :
4 NCBI additional mRNA sequence :
4 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
7 NONCODE transcripts :
4 LncBook transcripts :
9 LNCipedia transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC01781 Gene

No ASD Table

Relevant External Links for LINC01781 Gene

GeneLoc Exon Structure for
LINC01781

Expression for LINC01781 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for LINC01781

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC01781 Gene

Orthologs for LINC01781 Gene

Evolution for LINC01781 Gene

ENSEMBL:
Gene Tree for LINC01781 (if available)
TreeFam:
Gene Tree for LINC01781 (if available)

No data available for Orthologs for LINC01781 Gene

Paralogs for LINC01781 Gene

No data available for Paralogs for LINC01781 Gene

Variants for LINC01781 Gene

Additional dbSNP identifiers (rs#s) for LINC01781 Gene

Additional Variant Information for LINC01781 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC01781

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for LINC01781 Gene

Disorders for LINC01781 Gene

Additional Disease Information for LINC01781

No disorders were found for LINC01781 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC01781 Gene

Publications for LINC01781 Gene

  1. A molecular compendium of genes expressed in multiple myeloma. (PMID: 12200383) Claudio JO … Stewart AK (Blood 2002) 3 54

Products for LINC01781 Gene

Sources for LINC01781 Gene