Aliases for LINC01779 Gene

Subcategory (RNA class) for LINC01779 Gene

lncRNA

Number of RNA Genes sources:

3 / 14

Aliases for LINC01779 Gene

  • Long Intergenic Non-Protein Coding RNA 1779 2 3 5
  • LINC01779 2 168
  • NONHSAG002522 92
  • HSALNG0006313 167

External Ids for LINC01779 Gene

Previous GeneCards Identifiers for LINC01779 Gene

  • GC01U905658

Summaries for LINC01779 Gene

GeneCards Summary for LINC01779 Gene

LINC01779 (Long Intergenic Non-Protein Coding RNA 1779) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LINC01779 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LINC01779 Gene

Genomics for LINC01779 Gene

GeneHancer (GH) Regulatory Elements for LINC01779 Gene

Promoters and enhancers for LINC01779 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH01J116166 Promoter 0.5 Ensembl 500.7 +0.2 217 0.2 ZIC2 ELF3 LINC01779 lnc-CD58-8
GH01J116164 Enhancer 0.3 ENCODE 500.7 +0.7 691 0.2 SPI1 LINC01779 lnc-CD58-8
GH01J116165 Enhancer 0.3 ENCODE 500.7 +1.2 1238 0.5 SPI1 LINC01779 lnc-CD58-8
GH01J116167 Promoter/Enhancer 1.5 Ensembl ENCODE CraniofacialAtlas 0.7 +4.1 4074 1.7 HNRNPK CTCF NRF1 MYC PHF8 ZIC2 ZBTB26 REST RAD21 CTBP1 LINC01779 lnc-CD58-8
GH01J116150 Enhancer 1.4 Ensembl ENCODE CraniofacialAtlas 0.4 -11.6 -11574 3.8 FOXK2 HNRNPK CTCF NCOR1 EP300 ZIC2 KDM6A ZBTB10 TCF7 ZBTB26 MAB21L3 SLC22A15 ATP1A1 piR-33735-003 LINC01779
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC01779 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LINC01779 Gene

Genomic Locations for LINC01779 Gene
chr1:116,164,284-116,166,242
(GRCh38/hg38)
Size:
1,959 bases
Orientation:
Plus strand
chr1:116,706,905-116,708,862
(GRCh37/hg19)
Size:
1,958 bases
Orientation:
Plus strand

Genomic View for LINC01779 Gene

Genes around LINC01779 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LINC01779 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC01779 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC01779 Gene

Proteins for LINC01779 Gene

Post-translational modifications for LINC01779 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC01779 Gene

Domains & Families for LINC01779 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC01779 Gene

Function for LINC01779 Gene

Phenotypes From GWAS Catalog for LINC01779 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC01779 Gene

Localization for LINC01779 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC01779 Gene

Pathways & Interactions for LINC01779 Gene

PathCards logo

SuperPathways for LINC01779 Gene

No Data Available
;

Gene Ontology (GO) - Biological Process for LINC01779 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LINC01779 Gene

Drugs & Compounds for LINC01779 Gene

No Compound Related Data Available

Transcripts for LINC01779 Gene

mRNA/cDNA for LINC01779 Gene

2 RNACentral transcripts :
1 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
2 NONCODE transcripts :
2 LncBook transcripts :
1 LNCipedia transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC01779 Gene

No ASD Table

Relevant External Links for LINC01779 Gene

GeneLoc Exon Structure for
LINC01779

Expression for LINC01779 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC01779 Gene

Orthologs for LINC01779 Gene

Evolution for LINC01779 Gene

ENSEMBL:
Gene Tree for LINC01779 (if available)
TreeFam:
Gene Tree for LINC01779 (if available)

No data available for Orthologs for LINC01779 Gene

Paralogs for LINC01779 Gene

No data available for Paralogs for LINC01779 Gene

Variants for LINC01779 Gene

Additional dbSNP identifiers (rs#s) for LINC01779 Gene

Additional Variant Information for LINC01779 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC01779

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for LINC01779 Gene

Disorders for LINC01779 Gene

No disorders were found for LINC01779 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LINC01779 Gene

Publications for LINC01779 Gene

No publications were found for LINC01779 Gene.

No data available for Mastermind for LINC01779 Gene

Products for LINC01779 Gene

Sources for LINC01779 Gene