Aliases for LINC01778 Gene

Subcategory (RNA class) for LINC01778 Gene

lncRNA

Number of RNA Genes sources:

3 / 14

Aliases for LINC01778 Gene

  • Long Intergenic Non-Protein Coding RNA 1778 2 3 5
  • LINC01778 2 168
  • HSALNG0002198 167
  • NONHSAG000882 92

External Ids for LINC01778 Gene

Summaries for LINC01778 Gene

GeneCards Summary for LINC01778 Gene

LINC01778 (Long Intergenic Non-Protein Coding RNA 1778) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LINC01778 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LINC01778 Gene

Genomics for LINC01778 Gene

GeneHancer (GH) Regulatory Elements for LINC01778 Gene

Promoters and enhancers for LINC01778 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH01J030823 Promoter/Enhancer 2 Ensembl ENCODE CraniofacialAtlas dbSUPER 500.7 +0.0 38 2.3 ZNF217 TCF12 NRF1 SP1 GTF2E2 JUND FOS ZNF639 ZNF10 ZBTB5 LINC01778 piR-34822-006 SDC3 LOC400748 COL16A1 MATN1 MATN1-AS1 ENSG00000235790 lnc-ZCCHC17-11 RN7SKP91
GH01J030821 Enhancer 0.8 ENCODE dbSUPER 500.7 -2.0 -1987 0.8 FOXA2 SPI1 JUND RXRA KDM1A ZBTB33 HNF4A REST CEBPG CEBPB LINC01778 piR-34822-006 LOC400748 MATN1 MATN1-AS1 SDC3 ENSG00000229607
GH01J030842 Enhancer 0.9 Ensembl 0.4 +18.6 18604 0.7 ZNF639 ZIC2 TRIM28 HES1 TOE1 HDAC2 RBM25 OSR2 NR2F2 NEUROD1 RN7SKP91 lnc-ZCCHC17-11 SDC3 LINC01778
GH01J030840 Enhancer 0.8 ENCODE CraniofacialAtlas 0.4 +16.8 16795 0.8 ZNF10 NR2F2 NFIC REST PBX2 FOS NR2F1 RAD21 NFIA POLR2A RN7SKP91 lnc-ZCCHC17-11 LINC01778
GH01J030830 Enhancer 0.4 Ensembl 0.4 +6.8 6762 1.4 TRIM25 PBX2 MITF PKNOX1 CBX3 LOC400748 MATN1 MATN1-AS1 LINC01778 RN7SKP91 lnc-ZCCHC17-11
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC01778 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LINC01778 Gene

Genomic Locations for LINC01778 Gene
chr1:30,824,139-30,834,864
(GRCh38/hg38)
Size:
10,726 bases
Orientation:
Plus strand
chr1:31,297,075-31,307,131
(GRCh37/hg19)
Size:
10,057 bases
Orientation:
Plus strand

Genomic View for LINC01778 Gene

Genes around LINC01778 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LINC01778 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC01778 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC01778 Gene

Proteins for LINC01778 Gene

Post-translational modifications for LINC01778 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC01778 Gene

Domains & Families for LINC01778 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC01778 Gene

Function for LINC01778 Gene

Phenotypes From GWAS Catalog for LINC01778 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC01778 Gene

Localization for LINC01778 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC01778 Gene

Pathways & Interactions for LINC01778 Gene

PathCards logo

SuperPathways for LINC01778 Gene

No Data Available
;

Gene Ontology (GO) - Biological Process for LINC01778 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LINC01778 Gene

Drugs & Compounds for LINC01778 Gene

No Compound Related Data Available

Transcripts for LINC01778 Gene

mRNA/cDNA for LINC01778 Gene

22 RNACentral transcripts :
1 REFSEQ mRNAs :
2 NCBI additional mRNA sequence :
14 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
3 NONCODE transcripts :
9 LncBook transcripts :
11 LNCipedia transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC01778 Gene

No ASD Table

Relevant External Links for LINC01778 Gene

GeneLoc Exon Structure for
LINC01778

Expression for LINC01778 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC01778 Gene

Orthologs for LINC01778 Gene

Evolution for LINC01778 Gene

ENSEMBL:
Gene Tree for LINC01778 (if available)
TreeFam:
Gene Tree for LINC01778 (if available)

No data available for Orthologs for LINC01778 Gene

Paralogs for LINC01778 Gene

No data available for Paralogs for LINC01778 Gene

Variants for LINC01778 Gene

Additional dbSNP identifiers (rs#s) for LINC01778 Gene

Additional Variant Information for LINC01778 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC01778

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for LINC01778 Gene

Disorders for LINC01778 Gene

Additional Disease Information for LINC01778

No disorders were found for LINC01778 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC01778 Gene

Publications for LINC01778 Gene

No publications were found for LINC01778 Gene.

Products for LINC01778 Gene

Sources for LINC01778 Gene