Free for academic non-profit institutions. Other users need a Commercial license

Aliases for LINC01778 Gene

Subcategory (RNA class) for LINC01778 Gene

non-coding RNA

Quality Score for this RNA gene is

13

Aliases for LINC01778 Gene

  • Long Intergenic Non-Protein Coding RNA 1778 2 3 5

External Ids for LINC01778 Gene

Summaries for LINC01778 Gene

GeneCards Summary for LINC01778 Gene

LINC01778 (Long Intergenic Non-Protein Coding RNA 1778) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for LINC01778 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LINC01778 Gene

Genomics for LINC01778 Gene

GeneHancer (GH) Regulatory Elements for LINC01778 Gene

Promoters and enhancers for LINC01778 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH01J030823 Promoter/Enhancer 1.8 Ensembl ENCODE dbSUPER 650.7 +0.0 38 2.3 HDGF FOXA2 PKNOX1 CLOCK SMAD1 ARNT ARID4B SIN3A FEZF1 ZNF2 LINC01778 SNRNP40 SDC3 LOC400748 ENSG00000229447 COL16A1 MATN1 MATN1-AS1 ENSG00000235790 RN7SKP91
GH01J030821 Enhancer 0.8 ENCODE dbSUPER 650.7 -2.0 -1987 0.8 FOXA2 RXRA CEBPG REST YY1 SP1 JUND CEBPA HNF4G KDM1A LINC01778 LOC400748 MATN1 MATN1-AS1 SDC3 ENSG00000229607
GH01J030815 Enhancer 0.9 Ensembl ENCODE 0.4 -7.1 -7080 2.3 BCOR ZSCAN4 MAX SIN3A ZMYM3 BMI1 ZIC2 ZFHX2 POLR2A SCRT2 ENSG00000229607 SDC3 LOC400748 MATN1 MATN1-AS1 LINC01778
GH01J030840 Enhancer 0.6 ENCODE 0.4 +16.9 16906 0.5 NFIC NFIA IKZF1 ZNF10 SCRT2 RAD21 NR2F2 NR2C2 RN7SKP91 GC01M030833 LINC01778
GH01J030818 Enhancer 0.4 ENCODE 0.4 -5.4 -5430 0.2 CEBPB PRDM10 DPF2 SDC3 LOC400748 MATN1 MATN1-AS1 ENSG00000229607 LINC01778
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around LINC01778 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LINC01778 Gene

Genomic Locations for LINC01778 Gene
chr1:30,824,139-30,834,431
(GRCh38/hg38)
Size:
10,293 bases
Orientation:
Plus strand
chr1:31,297,075-31,307,131
(GRCh37/hg19)
Size:
10,057 bases
Orientation:
Plus strand

Genomic View for LINC01778 Gene

Genes around LINC01778 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LINC01778 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC01778 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC01778 Gene

Proteins for LINC01778 Gene

Post-translational modifications for LINC01778 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC01778 Gene

Domains & Families for LINC01778 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LINC01778 Gene

Function for LINC01778 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC01778 Gene

Localization for LINC01778 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC01778 Gene

Pathways & Interactions for LINC01778 Gene

SuperPathways for LINC01778 Gene

No Data Available

Interacting Proteins for LINC01778 Gene

Gene Ontology (GO) - Biological Process for LINC01778 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LINC01778 Gene

Drugs & Compounds for LINC01778 Gene

No Compound Related Data Available

Transcripts for LINC01778 Gene

mRNA/cDNA for LINC01778 Gene

(9) Ensembl transcripts including schematic representations, and UCSC links where relevant :
(10) RNA Central transcripts :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for LINC01778 Gene

No ASD Table

Relevant External Links for LINC01778 Gene

GeneLoc Exon Structure for
LINC01778
ECgene alternative splicing isoforms for
LINC01778

Expression for LINC01778 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC01778 Gene

Orthologs for LINC01778 Gene

Evolution for LINC01778 Gene

ENSEMBL:
Gene Tree for LINC01778 (if available)
TreeFam:
Gene Tree for LINC01778 (if available)

No data available for Orthologs for LINC01778 Gene

Paralogs for LINC01778 Gene

No data available for Paralogs for LINC01778 Gene

Variants for LINC01778 Gene

Sequence variations from dbSNP and Humsavar for LINC01778 Gene

SNP ID Clin Chr 01 pos Variation AA Info Type
rs1000016078 -- 30,824,482(+) G/A intron_variant
rs1000142638 -- 30,831,629(+) G/A intron_variant
rs1000177623 -- 30,825,651(+) T/C intron_variant
rs1000259965 -- 30,831,289(+) G/A intron_variant
rs1000636063 -- 30,825,895(+) C/T intron_variant

Additional Variant Information for LINC01778 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC01778

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for LINC01778 Gene

Disorders for LINC01778 Gene

Additional Disease Information for LINC01778

No disorders were found for LINC01778 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC01778 Gene

Publications for LINC01778 Gene

No publications were found for LINC01778 Gene.

Products for LINC01778 Gene

Sources for LINC01778 Gene

Content
Loading form....