Aliases for LINC01777 Gene

Subcategory (RNA class) for LINC01777 Gene

lncRNA

Number of RNA Genes sources:

3 / 14

Aliases for LINC01777 Gene

  • Long Intergenic Non-Protein Coding RNA 1777 2 3 5
  • LINC01777 2 168
  • HSALNG0000379 167
  • NONHSAG000207 92

External Ids for LINC01777 Gene

Summaries for LINC01777 Gene

GeneCards Summary for LINC01777 Gene

LINC01777 (Long Intergenic Non-Protein Coding RNA 1777) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LINC01777 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LINC01777 Gene

Genomics for LINC01777 Gene

GeneHancer (GH) Regulatory Elements for LINC01777 Gene

Promoters and enhancers for LINC01777 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH01J004327 Enhancer 0.6 dbSUPER 5.4 -82.5 -82482 4.7 EP300 ATF2 CREB1 TARDBP TAL1 TCF12 ZBTB21 CREM TEAD4 GATA1 LINC01777 lnc-AJAP1-9 piR-61101-001
GH01J004365 Enhancer 0.4 dbSUPER 5.8 -45.1 -45062 3.8 CREB1 RAD21 ZNF571 PPARG CTCF TP73-AS1 CEP104 LINC01777 piR-39858-001 piR-43106-001
GH01J004343 Enhancer 0.5 dbSUPER 4.8 -67.5 -67527 1.7 EP300 MEF2B SPI1 EBF1 ATF4 MYC PRDM10 ZNF148 POLR2A LINC01777 piR-61101-001 lnc-AJAP1-9
GH01J004338 Enhancer 0.4 dbSUPER 4.8 -72.1 -72093 2.2 ZFP64 ZNF184 CBFA2T3 LINC01777 piR-61101-001 lnc-AJAP1-9
GH01J004352 Enhancer 0.3 dbSUPER 5 -57.1 -57080 4.8 MNT ZSCAN4 LINC01777 piR-61101-001 lnc-AJAP1-9
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC01777 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LINC01777 Gene

Genomic Locations for LINC01777 Gene
chr1:4,412,027-4,424,689
(GRCh38/hg38)
Size:
12,663 bases
Orientation:
Plus strand
chr1:4,472,111-4,484,747
(GRCh37/hg19)
Size:
12,637 bases
Orientation:
Plus strand

Genomic View for LINC01777 Gene

Genes around LINC01777 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LINC01777 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC01777 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC01777 Gene

Proteins for LINC01777 Gene

Post-translational modifications for LINC01777 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC01777 Gene

Domains & Families for LINC01777 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC01777 Gene

Function for LINC01777 Gene

Phenotypes From GWAS Catalog for LINC01777 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC01777 Gene

Localization for LINC01777 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC01777 Gene

Pathways & Interactions for LINC01777 Gene

PathCards logo

SuperPathways for LINC01777 Gene

No Data Available
;

Gene Ontology (GO) - Biological Process for LINC01777 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LINC01777 Gene

Drugs & Compounds for LINC01777 Gene

No Compound Related Data Available

Transcripts for LINC01777 Gene

mRNA/cDNA for LINC01777 Gene

19 RNACentral transcripts :
1 REFSEQ mRNAs :
3 NCBI additional mRNA sequence :
13 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
4 NONCODE transcripts :
7 LncBook transcripts :
9 LNCipedia transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC01777 Gene

No ASD Table

Relevant External Links for LINC01777 Gene

GeneLoc Exon Structure for
LINC01777

Expression for LINC01777 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for LINC01777

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC01777 Gene

Orthologs for LINC01777 Gene

Evolution for LINC01777 Gene

ENSEMBL:
Gene Tree for LINC01777 (if available)
TreeFam:
Gene Tree for LINC01777 (if available)

No data available for Orthologs for LINC01777 Gene

Paralogs for LINC01777 Gene

No data available for Paralogs for LINC01777 Gene

Variants for LINC01777 Gene

Additional dbSNP identifiers (rs#s) for LINC01777 Gene

Structural Variations from Database of Genomic Variants (DGV) for LINC01777 Gene

Variant ID Type Subtype PubMed ID
esv1543124 CNV deletion 17803354
esv2213507 CNV deletion 18987734
esv3893878 CNV loss 25118596
nsv1012423 CNV gain 25217958
nsv830759 CNV loss 17160897

Additional Variant Information for LINC01777 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC01777

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for LINC01777 Gene

Disorders for LINC01777 Gene

Additional Disease Information for LINC01777

No disorders were found for LINC01777 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC01777 Gene

Publications for LINC01777 Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 54
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3 54

No data available for Mastermind for LINC01777 Gene

Products for LINC01777 Gene

Sources for LINC01777 Gene