Aliases for LINC01772 Gene

Subcategory (RNA class) for LINC01772 Gene

lncRNA

Number of RNA Genes sources:

3 / 17

Aliases for LINC01772 Gene

  • Long Intergenic Non-Protein Coding RNA 1772 2 3 5
  • LINC01772 2 5 165
  • ENSG00000226029 2
  • NONHSAG000473.2 91
  • HSALNG0001176 164

External Ids for LINC01772 Gene

Previous GeneCards Identifiers for LINC01772 Gene

  • GC01P016463
  • GC01P016465
  • GC01P016472

Summaries for LINC01772 Gene

GeneCards Summary for LINC01772 Gene

LINC01772 (Long Intergenic Non-Protein Coding RNA 1772) is an RNA Gene, and is affiliated with the lncRNA class. Diseases associated with LINC01772 include Alzheimer Disease and Pancreatic Cancer.

Additional gene information for LINC01772 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LINC01772 Gene

Genomics for LINC01772 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for LINC01772 Gene
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC01772 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for LINC01772 Gene

Genomic Locations for LINC01772 Gene
chr1:16,460,948-16,468,481
(GRCh38/hg38)
Size:
7,534 bases
Orientation:
Plus strand
chr1:16,787,443-16,794,976
(GRCh37/hg19)
Size:
7,534 bases
Orientation:
Plus strand

Genomic View for LINC01772 Gene

Genes around LINC01772 on UCSC Golden Path with GeneCards custom track
LINC01772 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
LINC01772 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC01772 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC01772 Gene

Proteins for LINC01772 Gene

Post-translational modifications for LINC01772 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC01772 Gene

Domains & Families for LINC01772 Gene

Gene Families for LINC01772 Gene

genes like me logo Genes that share domains with LINC01772: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC01772 Gene

Function for LINC01772 Gene

Phenotypes From GWAS Catalog for LINC01772 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC01772 Gene

Localization for LINC01772 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC01772 Gene

Pathways & Interactions for LINC01772 Gene

PathCards logo

SuperPathways for LINC01772 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LINC01772 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LINC01772 Gene

Drugs & Compounds for LINC01772 Gene

No Compound Related Data Available

Transcripts for LINC01772 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for LINC01772 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS000024580C_9606 lncRNA 3245 6

HGNC: 52562,

RefSeq: NR_147210,

Ensembl: ENST00000457898 (view in UCSC) ,

LncBook: HSALNT0002243,

LNCipedia: LINC01772:3,

NONCODE: NONHSAT001116.2,

URS0000BC4509_9606 lncRNA 1689 1

RefSeq: NR_147211,

LINC01772 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for LINC01772 Gene

1 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC01772 Gene

No ASD Table

Relevant External Links for LINC01772 Gene

GeneLoc Exon Structure for
LINC01772

Expression for LINC01772 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC01772 Gene

Orthologs for LINC01772 Gene

Evolution for LINC01772 Gene

ENSEMBL:
Gene Tree for LINC01772 (if available)
TreeFam:
Gene Tree for LINC01772 (if available)

No data available for Orthologs for LINC01772 Gene

Paralogs for LINC01772 Gene

No data available for Paralogs for LINC01772 Gene

Variants for LINC01772 Gene

Additional dbSNP identifiers (rs#s) for LINC01772 Gene

Additional Variant Information for LINC01772 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC01772

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for LINC01772 Gene

Disorders for LINC01772 Gene

MalaCards: The human disease database

(4) MalaCards diseases for LINC01772 Gene - From: LncRNADisease

Disorder Aliases PubMed IDs
alzheimer disease
  • ad
pancreatic cancer
  • pancreatic carcinoma
ovarian cancer
  • ovarian cancer, somatic
gastric cancer
  • gastric cancer, somatic
- elite association - COSMIC cancer census association via MalaCards

Additional Disease Information for LINC01772

genes like me logo Genes that share disorders with LINC01772: view

No data available for UniProtKB/Swiss-Prot and Genatlas for LINC01772 Gene

Publications for LINC01772 Gene

  1. Improved method for prioritization of disease associated lncRNAs based on ceRNA theory and functional genomics data. (PMID: 27992375) Wang P … Li X (Oncotarget 2017) 2 3
  2. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3

Products for LINC01772 Gene

Sources for LINC01772 Gene