Aliases for LINC01771 Gene

Data sources for LINC01771 Gene:

RNA type for LINC01771 Gene

lncRNA

Aliases for LINC01771 Gene

External Ids for LINC01771 Gene

Summaries for LINC01771 Gene

GeneCards Summary for LINC01771 Gene

LINC01771 (Long Intergenic Non-Protein Coding RNA 1771) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LINC01771 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LINC01771 Gene

Genomics for LINC01771 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for LINC01771 Gene
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC01771 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for LINC01771 Gene

Latest Assembly
chr1:53,328,168-53,342,220
(GRCh38/hg38)
Size:
14,053 bases
Orientation:
Plus strand

Previous Assembly
chr1:53,793,905-53,802,181
(GRCh37/hg19 by Entrez Gene)
Size:
8,277 bases
Orientation:
Plus strand

chr1:53,793,905-53,802,181
(GRCh37/hg19 by Ensembl)
Size:
8,277 bases
Orientation:
Plus strand

Genomic View for LINC01771 Gene

Genes around LINC01771 on UCSC Golden Path with GeneCards custom track
LINC01771 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Cytogenetic band:
LINC01771 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC01771 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC01771 Gene

Proteins for LINC01771 Gene

Post-translational modifications for LINC01771 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC01771 Gene

Domains & Families for LINC01771 Gene

Gene Families for LINC01771 Gene

genes like me logo Genes that share domains with LINC01771: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC01771 Gene

Function for LINC01771 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC01771 Gene

Localization for LINC01771 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC01771 Gene

Pathways & Interactions for LINC01771 Gene

PathCards logo

SuperPathways for LINC01771 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LINC01771 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LINC01771 Gene

Drugs & Compounds for LINC01771 Gene

No Compound Related Data Available

Transcripts for LINC01771 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for LINC01771 Gene

RNAcentral Transcript ID RNA Type Length (nts) # of Sources Source Identifiers and Annotations
URS0000247A85_9606 lncRNA 567 4

RefSeq: NR_131923,

Ensembl: ENST00000445039 (view in UCSC) ,

LncBook: HSALNT0006927,

LNCipedia: LINC01771:16,

URS00008B4CAF_9606 lncRNA 329 3

LncBook: HSALNT0006928,

LNCipedia: LINC01771:17,

NONCODE: NONHSAT003313.2,

URS00008BB74C_9606 lncRNA 1278 2

LNCipedia: LINC01771:15,

NONCODE: NONHSAT003312.2,

URS0000D5CC34_9606 lncRNA 9044 1

LNCipedia: LINC01771:14,

URS0000D59FD9_9606 lncRNA 7733 1

LNCipedia: LINC01771:13,

LINC01771 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for LINC01771 Gene

3 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC01771 Gene

No ASD Table

Relevant External Links for LINC01771 Gene

GeneLoc Exon Structure for
LINC01771

Expression for LINC01771 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC01771 Gene

Orthologs for LINC01771 Gene

Evolution for LINC01771 Gene

ENSEMBL:
Gene Tree for LINC01771 (if available)
TreeFam:
Gene Tree for LINC01771 (if available)
Alliance of Genome Resources:
Additional Orthologs for LINC01771

No data available for Orthologs for LINC01771 Gene

Paralogs for LINC01771 Gene

No data available for Paralogs for LINC01771 Gene

Variants for LINC01771 Gene

dbSNP identifiers (rs#s) for variants without ClinVar clinical significance for LINC01771 Gene

All consequence types are included: molecular consequences (e.g. missense, synonymous), and location-based (e.g. intron, upstream).

Additional Variant Information for LINC01771 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC01771
Leiden Open Variation Database (LOVD)
LINC01771

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for LINC01771 Gene

Disorders for LINC01771 Gene

Additional Disease Information for LINC01771

No disorders were found for LINC01771 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC01771 Gene

Publications for LINC01771 Gene

  1. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3
  2. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3

No data available for Mastermind for LINC01771 Gene

Products for LINC01771 Gene

Sources for LINC01771 Gene