LINC01768 Gene (RNA Gene)

Long Intergenic Non-Protein Coding RNA 1768

GC01P109830
GIFtS:
8
See more...

Aliases for LINC01768 Gene

Subcategory (RNA class) for LINC01768 Gene

lncRNA

Number of RNA Genes sources:

3 / 17

Aliases for LINC01768 Gene

  • Long Intergenic Non-Protein Coding RNA 1768 2 3 5
  • LINC01768 2 5 165
  • NONHSAG002358.2 91
  • HSALNG0005928 164

External Ids for LINC01768 Gene

Previous GeneCards Identifiers for LINC01768 Gene

  • GC01U905665

Summaries for LINC01768 Gene

GeneCards Summary for LINC01768 Gene

LINC01768 (Long Intergenic Non-Protein Coding RNA 1768) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LINC01768 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LINC01768 Gene

Genomics for LINC01768 Gene

GeneHancer (GH) Regulatory Elements Pubs

Download GeneHancer 2017 data
Promoters and enhancers for LINC01768 Gene
GeneHancer (GH) Identifier GH Type GH
Score		 GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites		 Gene Targets
GH01J109826 Enhancer 1 ENCODE dbSUPER 600.7 -1.0 -1025 0.2 IKZF1 JUND ZNF24 ZNF740 HDAC1 GATAD2B MGA CBX3 ZNF766 NFE2 LINC01768 ENSG00000244716 ENSG00000258634 CLCC1 ENSG00000273373 HSALNG0005927 EPS8L3 CSF1
GH01J109828 Promoter/Enhancer 0.7 EPDnew dbSUPER 600.7 +0.3 261 0.1 FOXA1 ESR1 LINC01768 piR-44727-001 EPS8L3 CSF1
GH01J109820 Promoter/Enhancer 1.8 FANTOM5 Ensembl ENCODE dbSUPER 0.4 -5.0 -5002 4.3 HNRNPL GATAD2A TFE3 LEF1 IKZF1 RCOR2 ZNF7 JUND FOXA1 MTA2 ENSG00000258634 STRIP1 ENSG00000273373 CSF1 WDR47 GNAI3 AMPD2 GSTM2 HSALNG0005927 LINC01768
GH01J109876 Enhancer 1.4 FANTOM5 ENCODE CraniofacialAtlas dbSUPER 0.3 +49.8 49801 3.2 GATAD2A ATF7 TEAD4 IKZF1 JUND IRF2 SP1 CEBPA EED CTCF UBL4B ENSG00000235005 lnc-CSF1-3 CSF1 LINC01768 EPS8L3
GH01J109863 Enhancer 1.2 FANTOM5 ENCODE dbSUPER 0.3 +36.9 36871 2.3 RFX1 SIX5 DDX20 ZIC2 ELK1 FOXJ2 CBX3 HMBOX1 EGR1 CTBP1 CSF1 ENSG00000235005 ENSG00000258634 ENSG00000273373 RBM15 GSTM3 GNAI3 lnc-CSF1-3 LINC01768 EPS8L3
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC01768 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for LINC01768 Gene

Genomic Locations for LINC01768 Gene
chr1:109,828,039-109,907,094
(GRCh38/hg38)
Size:
79,056 bases
Orientation:
Plus strand
chr1:110,370,977-110,414,058
(GRCh37/hg19)
Size:
43,082 bases
Orientation:
Plus strand

Genomic View for LINC01768 Gene

Genes around LINC01768 on UCSC Golden Path with GeneCards custom track
LINC01768 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
LINC01768 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC01768 Gene
GeneLoc Logo Genomic Neighborhood • Exon Structure • Gene Density

RefSeq DNA sequence for LINC01768 Gene

Proteins for LINC01768 Gene

Products:

  1. Antibody
  2. Protein
  3. Assay

Post-translational modifications for LINC01768 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC01768 Gene

Domains & Families for LINC01768 Gene

Gene Families for LINC01768 Gene

HGNC:
genes like me logo Genes that share domains with LINC01768: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC01768 Gene

Function for LINC01768 Gene

Products:

  1. Animal Model
  2. CRISPR
  3. miRNA
  4. Inhibitory RNA
  5. Clone
  6. Cell Line

Phenotypes From GWAS Catalog for LINC01768 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC01768 Gene

Localization for LINC01768 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC01768 Gene

Pathways & Interactions for LINC01768 Gene

PathCards logo

SuperPathways for LINC01768 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LINC01768 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LINC01768 Gene

Drugs & Compounds for LINC01768 Gene

Products:

  1. Drug
No Compound Related Data Available

Transcripts for LINC01768 Gene

Products:

  1. CRISPR
  2. miRNA
  3. Inhibitory RNA
  4. Clone

Non-coding RNA (ncRNA) Transcripts from RNAcentral for LINC01768 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS00002F2659_9606 lncRNA 476 5

HGNC: 52558,

Ensembl: ENST00000453347 (view in UCSC) ,

LncBook: HSALNT0012284,

LNCipedia: LINC01768:3,

NONCODE: NONHSAT005072.2,

URS00009BADC4_9606 lncRNA 476 2

LncBook: HSALNT0012285,

NONCODE: NONHSAT149526.1,

LINC01768 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Alternative Splicing Database (ASD) splice patterns (SP) for LINC01768 Gene

No ASD Table

Relevant External Links for LINC01768 Gene

GeneLoc Exon Structure for
LINC01768

No data available for mRNA/cDNA for LINC01768 Gene

Expression for LINC01768 Gene

Products:

  1. Primer
No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC01768 Gene

Orthologs for LINC01768 Gene

Evolution for LINC01768 Gene

ENSEMBL:
Gene Tree for LINC01768 (if available)
TreeFam:
Gene Tree for LINC01768 (if available)

No data available for Orthologs for LINC01768 Gene

Paralogs for LINC01768 Gene

No data available for Paralogs for LINC01768 Gene

Variants for LINC01768 Gene

Additional dbSNP identifiers (rs#s) for LINC01768 Gene

Additional Variant Information for LINC01768 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC01768

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for LINC01768 Gene

Disorders for LINC01768 Gene

No disorders were found for LINC01768 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LINC01768 Gene

Publications for LINC01768 Gene

No publications were found for LINC01768 Gene.

No data available for Mastermind for LINC01768 Gene

Products for LINC01768 Gene

Sources for LINC01768 Gene