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Aliases for LINC01757 Gene

Subcategory (RNA class) for LINC01757 Gene

non-coding RNA

Quality Score for this RNA gene is

13

Aliases for LINC01757 Gene

  • Long Intergenic Non-Protein Coding RNA 1757 2 3 5

External Ids for LINC01757 Gene

Summaries for LINC01757 Gene

GeneCards Summary for LINC01757 Gene

LINC01757 (Long Intergenic Non-Protein Coding RNA 1757) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for LINC01757 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LINC01757 Gene

Genomics for LINC01757 Gene

GeneHancer (GH) Regulatory Elements for LINC01757 Gene

Promoters and enhancers for LINC01757 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH01J020248 Enhancer 1 Ensembl ENCODE 0.4 +7.2 7202 3.8 ELF3 TFE3 SP1 PPARG PRDM1 ZNF644 RXRA GATAD2A RXRB POLR2A AKR7A3 LINC01757 LOC105376828
GH01J020232 Enhancer 1 Ensembl ENCODE 0.4 -11.3 -11294 19.2 CTCF MCM2 TRIM24 RAD21 CREB1 POLR2A HDAC1 CTBP1 TCF7L2 NRF1 CAMK2N1 VWA5B1 ENSG00000226664 AKR7A2 AKR7A3 UBXN10 LINC01757 LOC105376826
GH01J020255 Enhancer 0.9 Ensembl ENCODE 0.4 +14.3 14281 4 PRDM1 ZNF680 ZNF600 ZNF639 ZNF629 ZNF341 KLF9 JUND FOS ZBTB17 VWA5B1 ENSG00000226664 CAMK2N1 AKR7A2 SH2D5 LINC01757 LOC105376828
GH01J020247 Enhancer 0.2 Ensembl 0.7 +4.7 4706 0.4 LINC01757 LOC105376828
GH01J020259 Enhancer 0.3 Ensembl 0.4 +16.6 16606 0.2 RCOR1 VWA5B1 CAMK2N1 LOC105376828 LINC01757
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC01757 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LINC01757 Gene

Genomic Locations for LINC01757 Gene
chr1:20,243,095-20,244,655
(GRCh38/hg38)
Size:
1,561 bases
Orientation:
Plus strand
chr1:20,569,588-20,571,148
(GRCh37/hg19)
Size:
1,561 bases
Orientation:
Plus strand

Genomic View for LINC01757 Gene

Genes around LINC01757 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LINC01757 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC01757 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC01757 Gene

Proteins for LINC01757 Gene

Post-translational modifications for LINC01757 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC01757 Gene

Domains & Families for LINC01757 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LINC01757 Gene

Function for LINC01757 Gene

Phenotypes From GWAS Catalog for LINC01757 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC01757 Gene

Localization for LINC01757 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC01757 Gene

Pathways & Interactions for LINC01757 Gene

PathCards logo

SuperPathways for LINC01757 Gene

No Data Available

Interacting Proteins for LINC01757 Gene

Gene Ontology (GO) - Biological Process for LINC01757 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LINC01757 Gene

Drugs & Compounds for LINC01757 Gene

No Compound Related Data Available

Transcripts for LINC01757 Gene

mRNA/cDNA for LINC01757 Gene

(1) Additional mRNA sequences :
(1) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
(2) RNA Central transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC01757 Gene

No ASD Table

Relevant External Links for LINC01757 Gene

GeneLoc Exon Structure for
LINC01757
ECgene alternative splicing isoforms for
LINC01757

Expression for LINC01757 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC01757 Gene

Orthologs for LINC01757 Gene

Evolution for LINC01757 Gene

ENSEMBL:
Gene Tree for LINC01757 (if available)
TreeFam:
Gene Tree for LINC01757 (if available)

No data available for Orthologs for LINC01757 Gene

Paralogs for LINC01757 Gene

No data available for Paralogs for LINC01757 Gene

Variants for LINC01757 Gene

Sequence variations from dbSNP and Humsavar for LINC01757 Gene

SNP ID Clin Chr 01 pos Variation AA Info Type
rs1000347084 -- 20,241,110(+) C/G upstream_transcript_variant
rs1001172134 -- 20,241,147(+) T/C upstream_transcript_variant
rs1002789858 -- 20,242,518(+) C/A/T upstream_transcript_variant
rs1002835492 -- 20,243,278(+) A/G intron_variant
rs1002904598 -- 20,242,868(+) G/T upstream_transcript_variant

Additional Variant Information for LINC01757 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC01757

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for LINC01757 Gene

Disorders for LINC01757 Gene

Additional Disease Information for LINC01757

No disorders were found for LINC01757 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC01757 Gene

Publications for LINC01757 Gene

No publications were found for LINC01757 Gene.

No data available for External Links for LINC01757 Gene

Products for LINC01757 Gene

Sources for LINC01757 Gene

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