Aliases for LINC01754 Gene

Subcategory (RNA class) for LINC01754 Gene

lncRNA

Quality Score for this RNA gene is

15

Aliases for LINC01754 Gene

  • Long Intergenic Non-Protein Coding RNA 1754 2 3 5
  • LINC01754 2 170
  • HSALNG0130541 169
  • NONHSAG031914 94

External Ids for LINC01754 Gene

Summaries for LINC01754 Gene

GeneCards Summary for LINC01754 Gene

LINC01754 (Long Intergenic Non-Protein Coding RNA 1754) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LINC01754 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LINC01754 Gene

Genomics for LINC01754 Gene

GeneHancer (GH) Regulatory Elements for LINC01754 Gene

Promoters and enhancers for LINC01754 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH20J047422 Enhancer 0.3 dbSUPER 750.6 -0.8 -757 1.6 CEBPG CEBPB LINC01754 LINC00494 piR-43106-134
GH20J047420 Enhancer 0.2 dbSUPER 750.6 +1.0 995 0.6 LINC01754 lnc-ZMYND8-4 lnc-ZMYND8-5
GH20J047410 Promoter/Enhancer 1.8 EPDnew Ensembl ENCODE dbSUPER 5.9 +8.0 7968 7.9 SP1 LCORL NR2F1 NR2F6 CREB1 MIXL1 ETV6 RELA L3MBTL2 NKRF ZMYND8 NCOA3 ENSG00000229853 TP53RK ZNF334 ZNF663P LINC01754 LINC00494 lnc-NCOA3-20 lnc-ZMYND8-3
GH20J047427 Enhancer 1.3 FANTOM5 Ensembl ENCODE dbSUPER 6 -6.8 -6753 2.7 NR2F6 CREB1 HLF RERE CEBPG PPARG ZNF644 KAT8 HMG20B CEBPA LINC01754 LINC00494 NCOA3 piR-43106-134
GH20J047436 Enhancer 1.3 FANTOM5 Ensembl ENCODE dbSUPER 0.4 -17.1 -17067 5.8 USF2 NFYC ETV6 RELA L3MBTL2 ZNF652 POLR2A MAFK ELF1 CREM NCOA3 TP53RK piR-43106-134 LINC01754 lnc-ZMYND8-10
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC01754 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LINC01754 Gene

Genomic Locations for LINC01754 Gene
chr20:47,382,766-47,422,221
(GRCh38/hg38)
Size:
39,456 bases
Orientation:
Minus strand

Genomic View for LINC01754 Gene

Genes around LINC01754 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LINC01754 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC01754 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC01754 Gene

Proteins for LINC01754 Gene

Post-translational modifications for LINC01754 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC01754 Gene

Domains & Families for LINC01754 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC01754 Gene

Function for LINC01754 Gene

Phenotypes From GWAS Catalog for LINC01754 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC01754 Gene

Localization for LINC01754 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC01754 Gene

Pathways & Interactions for LINC01754 Gene

PathCards logo

SuperPathways for LINC01754 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LINC01754 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LINC01754 Gene

Drugs & Compounds for LINC01754 Gene

No Compound Related Data Available

Transcripts for LINC01754 Gene

mRNA/cDNA for LINC01754 Gene

(3) REFSEQ mRNAs :
(2) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
(8) RNACentral transcripts :
(4) LncBook transcripts :
(4) NONCODE transcripts :
(4) LNCipedia transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC01754 Gene

No ASD Table

Relevant External Links for LINC01754 Gene

GeneLoc Exon Structure for
LINC01754
ECgene alternative splicing isoforms for
LINC01754

Expression for LINC01754 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC01754 Gene

Orthologs for LINC01754 Gene

Evolution for LINC01754 Gene

ENSEMBL:
Gene Tree for LINC01754 (if available)
TreeFam:
Gene Tree for LINC01754 (if available)

No data available for Orthologs for LINC01754 Gene

Paralogs for LINC01754 Gene

No data available for Paralogs for LINC01754 Gene

Variants for LINC01754 Gene

Sequence variations from dbSNP and Humsavar for LINC01754 Gene

SNP ID Clin Chr 20 pos Variation AA Info Type
rs1000001347 -- 47,401,545(-) A/C intron_variant
rs1000067265 -- 47,404,409(-) C/G intron_variant
rs1000078249 -- 47,389,252(-) T/G intron_variant
rs1000164223 -- 47,398,503(-) G/A/T intron_variant
rs1000202164 -- 47,391,775(-) A/T intron_variant

Additional Variant Information for LINC01754 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC01754

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for LINC01754 Gene

Disorders for LINC01754 Gene

Additional Disease Information for LINC01754

No disorders were found for LINC01754 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC01754 Gene

Publications for LINC01754 Gene

No publications were found for LINC01754 Gene.

Products for LINC01754 Gene

Sources for LINC01754 Gene