Aliases for LINC01754 Gene

Subcategory (RNA class) for LINC01754 Gene

lncRNA

Number of RNA Genes sources:

3 / 17

Aliases for LINC01754 Gene

  • Long Intergenic Non-Protein Coding RNA 1754 2 3 5
  • LINC01754 2 5 165
  • NONHSAG031914.2 91
  • HSALNG0130541 164

External Ids for LINC01754 Gene

Summaries for LINC01754 Gene

GeneCards Summary for LINC01754 Gene

LINC01754 (Long Intergenic Non-Protein Coding RNA 1754) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LINC01754 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LINC01754 Gene

Genomics for LINC01754 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for LINC01754 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH20J047422 Enhancer 0.4 dbSUPER 600.7 -0.8 -757 1.6 CEBPB JUND EGR2 CEBPG LINC01754 LINC00494 piR-43106-134 ZMYND8 NCOA3
GH20J047420 Enhancer 0.3 dbSUPER 600.7 +1.0 995 0.6 NFXL1 SPI1 LINC01754 lnc-ZMYND8-4 lnc-ZMYND8-5 ZMYND8 NCOA3
GH20J047410 Promoter/Enhancer 1.8 EPDnew Ensembl ENCODE dbSUPER 5.9 +8.0 7968 7.9 SP1 GATAD2A ZNF512 SOX13 RCOR2 BACH1 STAT3 ZNF143 RELA PKNOX1 ZMYND8 NCOA3 ZNF334 ENSG00000229853 TP53RK ZNF663P LINC01754 LINC00494 lnc-NCOA3-20 lnc-ZMYND8-3
GH20J047427 Enhancer 1.3 FANTOM5 Ensembl ENCODE dbSUPER 6.1 -6.8 -6753 2.7 GATAD2A ATF7 SOX13 RCOR2 RXRB CEBPA CEBPB ETS1 TCF7 SMARCC2 LINC01754 LINC00494 NCOA3 piR-43106-134 ZMYND8
GH20J047436 Enhancer 1.4 FANTOM5 Ensembl ENCODE dbSUPER 0.4 -17.1 -17067 5.8 TEAD4 RFX1 FOXA1 RELA PKNOX1 IKZF2 POLR2A EED ZSCAN29 SP1 NCOA3 piR-43106-134 LINC01754 lnc-ZMYND8-10 ZMYND8
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC01754 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for LINC01754 Gene

Genomic Locations for LINC01754 Gene
chr20:47,382,766-47,422,221
(GRCh38/hg38)
Size:
39,456 bases
Orientation:
Minus strand

Genomic View for LINC01754 Gene

Genes around LINC01754 on UCSC Golden Path with GeneCards custom track
LINC01754 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
LINC01754 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC01754 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC01754 Gene

Proteins for LINC01754 Gene

Post-translational modifications for LINC01754 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC01754 Gene

Domains & Families for LINC01754 Gene

Gene Families for LINC01754 Gene

genes like me logo Genes that share domains with LINC01754: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC01754 Gene

Function for LINC01754 Gene

Phenotypes From GWAS Catalog for LINC01754 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC01754 Gene

Localization for LINC01754 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC01754 Gene

Pathways & Interactions for LINC01754 Gene

PathCards logo

SuperPathways for LINC01754 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LINC01754 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LINC01754 Gene

Drugs & Compounds for LINC01754 Gene

No Compound Related Data Available

Transcripts for LINC01754 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for LINC01754 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS0000131146_9606 lncRNA 750 4

Ensembl: ENST00000437920 (view in UCSC) ,

LncBook: HSALNT0268008,

LNCipedia: LINC01754:9,

NONCODE: NONHSAT080056.2,

URS0000BC43A9_9606 lncRNA 2719 2

HGNC: 52542,

RefSeq: NR_146494,

URS0000BC4570_9606 lncRNA 2578 1

RefSeq: NR_146495,

URS0000BC43DE_9606 lncRNA 2526 1

RefSeq: NR_146496,

URS0000EF54CC_9606 lncRNA 832 1

Ensembl: ENST00000655691 (view in UCSC) ,

LINC01754 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Alternative Splicing Database (ASD) splice patterns (SP) for LINC01754 Gene

No ASD Table

Relevant External Links for LINC01754 Gene

GeneLoc Exon Structure for
LINC01754

No data available for mRNA/cDNA for LINC01754 Gene

Expression for LINC01754 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC01754 Gene

Orthologs for LINC01754 Gene

Evolution for LINC01754 Gene

ENSEMBL:
Gene Tree for LINC01754 (if available)
TreeFam:
Gene Tree for LINC01754 (if available)

No data available for Orthologs for LINC01754 Gene

Paralogs for LINC01754 Gene

No data available for Paralogs for LINC01754 Gene

Variants for LINC01754 Gene

Additional dbSNP identifiers (rs#s) for LINC01754 Gene

Additional Variant Information for LINC01754 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC01754

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for LINC01754 Gene

Disorders for LINC01754 Gene

No disorders were found for LINC01754 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC01754 Gene

Publications for LINC01754 Gene

No publications were found for LINC01754 Gene.

Products for LINC01754 Gene

Sources for LINC01754 Gene