Aliases for LINC01753 Gene

Data sources for LINC01753 Gene:

RNA type for LINC01753 Gene

lncRNA

Aliases for LINC01753 Gene

External Ids for LINC01753 Gene

Summaries for LINC01753 Gene

GeneCards Summary for LINC01753 Gene

LINC01753 (Long Intergenic Non-Protein Coding RNA 1753) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LINC01753 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LINC01753 Gene

Genomics for LINC01753 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for LINC01753 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH01J055915 Enhancer 0.6 Ensembl ENCODE 16.6 +28.5 28464 1.9 DPF2 RFX1 BHLHE40 MNT FOS CEBPB lnc-PRKAA2-11 LINC01753 HSALNG0003841 LINC01755 ENSG00000234810 ENSG00000284686 USP24
GH01J055877 Enhancer 0.6 ENCODE 15 +67.1 67120 1.4 ZNF580 FEZF1 ZNF341 ZNF843 PRDM6 SCRT1 ZNF488 PRDM4 TRIM28 ZBTB8A LINC01753 HSALNG0003841 LINC01755 lnc-PRKAA2-11 ENSG00000234810 ENSG00000284686 USP24
GH01J055897 Enhancer 0.4 ENCODE 16.3 +46.7 46699 1.1 CEBPA CEBPB FOSL2 FOS LINC01753 HSALNG0003841 lnc-PRKAA2-11 LINC01755 ENSG00000284686 ENSG00000234810 USP24
GH01J055860 Enhancer 0.6 Ensembl ENCODE 11.7 +84.4 84422 1.9 SMC3 RAD21 CTCF LINC01753 LINC01755 LOC105378740 HSALNG0003841 ENSG00000234810 USP24 ENSG00000284686
GH01J055930 Enhancer 0.6 Ensembl ENCODE 8.2 +13.4 13384 2 JUND GATA2 PRDM10 EP300 LINC01753 PIGQP1 lnc-PLPP3-8 lnc-PRKAA2-11 LINC01755 ENSG00000234810 ENSG00000284686 USP24
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC01753 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for LINC01753 Gene

Latest Assembly
chr1:55,915,603-55,944,980
(GRCh38/hg38)
Size:
29,378 bases
Orientation:
Minus strand

Previous Assembly
chr1:56,381,282-56,410,636
(GRCh37/hg19 by Entrez Gene)
Size:
29,355 bases
Orientation:
Minus strand

chr1:56,381,282-56,410,636
(GRCh37/hg19 by Ensembl)
Size:
29,355 bases
Orientation:
Minus strand

Genomic View for LINC01753 Gene

Genes around LINC01753 on UCSC Golden Path with GeneCards custom track
LINC01753 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Cytogenetic band:
LINC01753 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC01753 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC01753 Gene

Proteins for LINC01753 Gene

Post-translational modifications for LINC01753 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC01753 Gene

Domains & Families for LINC01753 Gene

Gene Families for LINC01753 Gene

genes like me logo Genes that share domains with LINC01753: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC01753 Gene

Function for LINC01753 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC01753 Gene

Localization for LINC01753 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC01753 Gene

Pathways & Interactions for LINC01753 Gene

PathCards logo

SuperPathways for LINC01753 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LINC01753 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LINC01753 Gene

Drugs & Compounds for LINC01753 Gene

No Compound Related Data Available

Transcripts for LINC01753 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for LINC01753 Gene

RNAcentral Transcript ID RNA Type Length (nts) # of Sources Source Identifiers and Annotations
URS00009C60EE_9606 lncRNA 597 3

Ensembl: ENST00000635532 (view in UCSC) ,

LncBook: HSALNT0007195,

LNCipedia: LINC01753:4,

URS0000EEE7D6_9606 lncRNA 702 1

Ensembl: ENST00000665254 (view in UCSC) ,

URS0000EF54E3_9606 lncRNA 648 1

Ensembl: ENST00000458145 (view in UCSC) ,

URS0000BC441D_9606 lncRNA 631 1

RefSeq: NR_147162,

URS0000EF0DAA_9606 lncRNA 606 1

Ensembl: ENST00000671610 (view in UCSC) ,

LINC01753 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for LINC01753 Gene

1 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC01753 Gene

No ASD Table

Relevant External Links for LINC01753 Gene

GeneLoc Exon Structure for
LINC01753

Expression for LINC01753 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC01753 Gene

Orthologs for LINC01753 Gene

Evolution for LINC01753 Gene

ENSEMBL:
Gene Tree for LINC01753 (if available)
TreeFam:
Gene Tree for LINC01753 (if available)
Alliance of Genome Resources:
Additional Orthologs for LINC01753

No data available for Orthologs for LINC01753 Gene

Paralogs for LINC01753 Gene

No data available for Paralogs for LINC01753 Gene

Variants for LINC01753 Gene

dbSNP identifiers (rs#s) for variants without ClinVar clinical significance for LINC01753 Gene

All consequence types are included: molecular consequences (e.g. missense, synonymous), and location-based (e.g. intron, upstream).

Additional Variant Information for LINC01753 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC01753
Leiden Open Variation Database (LOVD)
LINC01753

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for LINC01753 Gene

Disorders for LINC01753 Gene

Additional Disease Information for LINC01753

No disorders were found for LINC01753 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC01753 Gene

Publications for LINC01753 Gene

No publications were found for LINC01753 Gene.

No data available for Mastermind for LINC01753 Gene

Products for LINC01753 Gene

Sources for LINC01753 Gene