LINC01750 Gene (RNA Gene)

Long Intergenic Non-Protein Coding RNA 1750

GC01P111992
GIFtS:
12
See more...

Aliases for LINC01750 Gene

Subcategory (RNA class) for LINC01750 Gene

lncRNA

Number of RNA Genes sources:

3 / 17

Aliases for LINC01750 Gene

  • Long Intergenic Non-Protein Coding RNA 1750 2 3 5
  • LINC01750 2 5 165
  • NONHSAG002427.2 91
  • HSALNG0006084 164

External Ids for LINC01750 Gene

Summaries for LINC01750 Gene

GeneCards Summary for LINC01750 Gene

LINC01750 (Long Intergenic Non-Protein Coding RNA 1750) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LINC01750 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LINC01750 Gene

Genomics for LINC01750 Gene

GeneHancer (GH) Regulatory Elements Pubs

Download GeneHancer 2017 data
Promoters and enhancers for LINC01750 Gene
GeneHancer (GH) Identifier GH Type GH
Score		 GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites		 Gene Targets
GH01J111990 Promoter/Enhancer 2 EPDnew Ensembl ENCODE CraniofacialAtlas 612.4 +0.8 764 4.2 CREB1 CTCF PRDM10 ZNF692 TARDBP FOXA1 RFX1 ZNF776 ZIC2 ZSCAN4 LINC01750 KCND3 lnc-FAM212B-4 ENSG00000243960 ST7L DDX20 CEPT1 DRAM2 MOV10 SLC16A1-AS1
GH01J111987 Enhancer 0.4 Ensembl 600.7 -1.7 -1733 0.4 ESRRA EZH2 CREB1 LINC01750 KCND3 lnc-FAM212B-4 piR-60387 lnc-KCND3-4 INKA2
GH01J111963 Enhancer 0.3 Ensembl 16.9 -25.1 -25133 1.6 YY1 ZNF217 LINC01750 KCND3 KCND3-AS1 ENSG00000243960 lnc-FAM212B-4 piR-60387 INKA2
GH01J111952 Enhancer 0.5 Ensembl 11.1 -37.0 -37034 0.6 DPF2 HSF1 ZNF664 FOS MNT FOSL2 KCND3 LINC01750 KCND3-AS1 lnc-FAM212B-4 piR-60387 INKA2
GH01J112005 Enhancer 0.5 Ensembl 8.7 +15.8 15767 0.6 ZNF512 ZNF444 ZNF512B ZNF207 GATAD2B NONO ZNF366 NCOA3 LOC105378906 lnc-DDX20-4 KCND3-AS1 LINC01750 KCND3 lnc-KCND3-4 CTTNBP2NL
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC01750 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for LINC01750 Gene

Genomic Locations for LINC01750 Gene
chr1:111,989,534-111,999,349
(GRCh38/hg38)
Size:
9,816 bases
Orientation:
Plus strand
chr1:112,532,392-112,541,464
(GRCh37/hg19)
Size:
9,073 bases
Orientation:
Plus strand

Genomic View for LINC01750 Gene

Genes around LINC01750 on UCSC Golden Path with GeneCards custom track
LINC01750 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
LINC01750 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC01750 Gene
GeneLoc Logo Genomic Neighborhood • Exon Structure • Gene Density

RefSeq DNA sequence for LINC01750 Gene

Proteins for LINC01750 Gene

Products:

  1. Antibody
  2. Protein
  3. Assay

Post-translational modifications for LINC01750 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC01750 Gene

Domains & Families for LINC01750 Gene

Gene Families for LINC01750 Gene

HGNC:
genes like me logo Genes that share domains with LINC01750: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC01750 Gene

Function for LINC01750 Gene

Products:

  1. Animal Model
  2. CRISPR
  3. miRNA
  4. Inhibitory RNA
  5. Clone
  6. Cell Line

Phenotypes From GWAS Catalog for LINC01750 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC01750 Gene

Localization for LINC01750 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC01750 Gene

Pathways & Interactions for LINC01750 Gene

PathCards logo

SuperPathways for LINC01750 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LINC01750 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LINC01750 Gene

Drugs & Compounds for LINC01750 Gene

Products:

  1. Drug
No Compound Related Data Available

Transcripts for LINC01750 Gene

Products:

  1. CRISPR
  2. miRNA
  3. Inhibitory RNA
  4. Clone

Non-coding RNA (ncRNA) Transcripts from RNAcentral for LINC01750 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS000054BD20_9606 lncRNA 3068 5

HGNC: 52538,

RefSeq: NR_145438,

Ensembl: ENST00000438293 (view in UCSC) ,

LncBook: HSALNT0012731,

LNCipedia: LINC01750:15,

URS0000126A71_9606 lncRNA 975 4

Ensembl: ENST00000442751 (view in UCSC) ,

LncBook: HSALNT0012724,

LNCipedia: LINC01750:10,

NONCODE: NONHSAT005218.2,

URS00001D634E_9606 lncRNA 709 3

Ensembl: ENST00000428461 (view in UCSC) ,

LncBook: HSALNT0012730,

LNCipedia: LINC01750:13,

URS00008C02C3_9606 lncRNA 1093 2

LNCipedia: LINC01750:14,

NONCODE: NONHSAT005220.2,

URS0000D5BCD8_9606 lncRNA 9609 1

LNCipedia: LINC01750:9,

LINC01750 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for LINC01750 Gene

1 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC01750 Gene

No ASD Table

Relevant External Links for LINC01750 Gene

GeneLoc Exon Structure for
LINC01750

Expression for LINC01750 Gene

Products:

  1. Primer

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for LINC01750

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC01750 Gene

Orthologs for LINC01750 Gene

This gene was present in the common ancestor of human and chimp.

Orthologs for LINC01750 Gene

Organism Taxonomy Gene Similarity Type Details
Chimpanzee
(Pan troglodytes)
 Mammalia LOC101057411 30
  • 99.73 (n)
Species where no ortholog for LINC01750 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Eremothecium gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • Alpha proteobacteria (Wolbachia pipientis)
  • Amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • Baker's yeast (Saccharomyces cerevisiae)
  • Barley (Hordeum vulgare)
  • Beta proteobacteria (Neisseria meningitidis)
  • Bread mold (Neurospora crassa)
  • Chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • Common water flea (Daphnia pulex)
  • Corn (Zea mays)
  • Cow (Bos Taurus)
  • Dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • Filamentous fungi (Aspergillus nidulans)
  • Firmicute Bacteria (Streptococcus pneumoniae)
  • Fission Yeast (Schizosaccharomyces pombe)
  • Fruit Fly (Drosophila melanogaster)
  • Green Algae (Chlamydomonas reinhardtii)
  • Honey Bee (Apis mellifera)
  • K. Lactis Yeast (Kluyveromyces lactis)
  • Lizard (Anolis carolinensis)
  • Loblloly Pine (Pinus taeda)
  • Malaria Parasite (Plasmodium falciparum)
  • Medicago Trunc (Medicago Truncatula)
  • Moss (Physcomitrella patens)
  • Mouse (Mus musculus)
  • Oppossum (Monodelphis domestica)
  • Orangutan (Pongo pygmaeus)
  • Pig (Sus scrofa)
  • Platypus (Ornithorhynchus anatinus)
  • Rainbow Trout (Oncorhynchus mykiss)
  • Rat (Rattus norvegicus)
  • Rice (Oryza sativa)
  • Rice Blast Fungus (Magnaporthe grisea)
  • Schistosome Parasite (Schistosoma mansoni)
  • Sea Anemone (Nematostella vectensis)
  • Sea Vase (Ciona intestinalis)
  • Sea Squirt (Ciona savignyi)
  • Sea Urchin (Strongylocentrotus purpuratus)
  • Sorghum (Sorghum bicolor)
  • Soybean (Glycine max)
  • Stem Rust Fungus (Puccinia graminis)
  • Sugarcane (Saccharum officinarum)
  • Thale Cress (Arabidopsis thaliana)
  • Tomato (Lycopersicon esculentum)
  • Toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • Tropical Clawed Frog (Silurana tropicalis)
  • Wheat (Triticum aestivum)
  • Worm (Caenorhabditis elegans)
  • Zebrafish (Danio rerio)

Evolution for LINC01750 Gene

ENSEMBL:
Gene Tree for LINC01750 (if available)
TreeFam:
Gene Tree for LINC01750 (if available)

Paralogs for LINC01750 Gene

No data available for Paralogs for LINC01750 Gene

Variants for LINC01750 Gene

Additional dbSNP identifiers (rs#s) for LINC01750 Gene

Structural Variations from Database of Genomic Variants (DGV) for LINC01750 Gene

Variant ID Type Subtype PubMed ID
nsv463272 CNV loss 19166990
nsv547556 CNV loss 21841781
nsv824143 CNV gain 20364138
nsv831048 CNV gain 17160897
nsv951394 CNV deletion 24416366

Additional Variant Information for LINC01750 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC01750

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for LINC01750 Gene

Disorders for LINC01750 Gene

Additional Disease Information for LINC01750

ATLAS of Genetics and Cytogenetics in Oncology and Haematology
Open Targets Platform

No disorders were found for LINC01750 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC01750 Gene

Publications for LINC01750 Gene

  1. Common genetic variation and performance on standardized cognitive tests. (PMID: 20125193) Cirulli ET … Goldstein DB (European journal of human genetics : EJHG 2010) 3
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3

No data available for Mastermind for LINC01750 Gene

Products for LINC01750 Gene

Sources for LINC01750 Gene