Aliases for LINC01748 Gene

Data sources for LINC01748 Gene:

Subcategory (RNA class) for LINC01748 Gene

lncRNA

Aliases for LINC01748 Gene

External Ids for LINC01748 Gene

Summaries for LINC01748 Gene

GeneCards Summary for LINC01748 Gene

LINC01748 (Long Intergenic Non-Protein Coding RNA 1748) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LINC01748 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LINC01748 Gene

Genomics for LINC01748 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for LINC01748 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH01J060639 Promoter 0.9 Ensembl 250.7 +0.4 406 1.4 MNT IKZF1 NONO ARNT NBN ZEB2 TAF9B SKIL ZNF316 SUPT5H LINC01748 piR-33432-014 piR-47086-002 piR-45012-010 NFIA C1orf87
GH01J060622 Promoter 0.5 EPDnew 250.4 +18.0 17958 0.1 EGR2 ZFHX2 LINC01748 piR-37895-004 piR-45012-010 NFIA C1orf87
GH01J060619 Promoter/Enhancer 1.3 VISTA UCNEbase Ensembl ENCODE 0.4 +19.4 19420 2.2 GLIS1 SP7 PKNOX1 ZBTB12 WT1 piR-37895-004 piR-45012-010 LINC01748 NFIA C1orf87
GH01J060572 Enhancer 1 FANTOM5 Ensembl ENCODE 0.2 +65.7 65736 4.1 CEBPB FOXA2 TAL1 JUND FOSL1 ZBTB40 ZNF589 CEBPG TEAD4 ATF4 lnc-C1orf87-6 lnc-NFIA-2 LINC01748 NFIA C1orf87
GH01J060638 Enhancer 0.3 Ensembl 0.7 +2.5 2506 0.4 DACH1 LINC01748 piR-45012-010 piR-37895-004 NFIA C1orf87
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC01748 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for LINC01748 Gene

Latest Assembly
chr1:60,515,715-60,640,507
(GRCh38/hg38)
Size:
124,793 bases
Orientation:
Minus strand

Previous Assembly
chr1:60,981,388-61,088,357
(GRCh37/hg19 by Entrez Gene)
Size:
106,970 bases
Orientation:
Minus strand

chr1:61,005,921-61,106,163
(GRCh37/hg19 by Ensembl)
Size:
100,243 bases
Orientation:
Minus strand

Genomic View for LINC01748 Gene

Genes around LINC01748 on UCSC Golden Path with GeneCards custom track
LINC01748 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Cytogenetic band:
LINC01748 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC01748 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC01748 Gene

Proteins for LINC01748 Gene

Post-translational modifications for LINC01748 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC01748 Gene

Domains & Families for LINC01748 Gene

Gene Families for LINC01748 Gene

genes like me logo Genes that share domains with LINC01748: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC01748 Gene

Function for LINC01748 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC01748 Gene

Localization for LINC01748 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC01748 Gene

Pathways & Interactions for LINC01748 Gene

PathCards logo

SuperPathways for LINC01748 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LINC01748 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LINC01748 Gene

Drugs & Compounds for LINC01748 Gene

No Compound Related Data Available

Transcripts for LINC01748 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for LINC01748 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS00009C60F6_9606 lncRNA 3229 4

RefSeq: NR_146508,

Ensembl: ENST00000634836 (view in UCSC) ,

LncBook: HSALNT0007828,

LNCipedia: LINC01748:28,

URS000014220B_9606 lncRNA 1798 4

Ensembl: ENST00000439156 (view in UCSC) ,

LncBook: HSALNT0007849,

LNCipedia: LINC01748:27,

NONCODE: NONHSAT003590.2,

URS00009C6139_9606 lncRNA 2864 3

Ensembl: ENST00000634281 (view in UCSC) ,

LncBook: HSALNT0007850,

LNCipedia: LINC01748:32,

URS00009C602B_9606 lncRNA 2143 2

Ensembl: ENST00000635616 (view in UCSC) ,

LNCipedia: LINC01748:30,

URS0000EF1840_9606 lncRNA 6038 1

Ensembl: ENST00000635048 (view in UCSC) ,

LINC01748 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for LINC01748 Gene

1 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC01748 Gene

No ASD Table

Relevant External Links for LINC01748 Gene

GeneLoc Exon Structure for
LINC01748

Expression for LINC01748 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC01748 Gene

Orthologs for LINC01748 Gene

Evolution for LINC01748 Gene

ENSEMBL:
Gene Tree for LINC01748 (if available)
TreeFam:
Gene Tree for LINC01748 (if available)

No data available for Orthologs for LINC01748 Gene

Paralogs for LINC01748 Gene

No data available for Paralogs for LINC01748 Gene

Variants for LINC01748 Gene

dbSNP identifiers (rs#s) for variants without ClinVar clinical significance for LINC01748 Gene

All consequence types are included: molecular consequences (e.g. missense, synonymous), and location-based (e.g. intron, upstream).

Additional Variant Information for LINC01748 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC01748

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for LINC01748 Gene

Disorders for LINC01748 Gene

Additional Disease Information for LINC01748

No disorders were found for LINC01748 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC01748 Gene

Publications for LINC01748 Gene

  1. Antisense promoter of human L1 retrotransposon drives transcription of adjacent cellular genes. (PMID: 11238933) Speek M (Molecular and cellular biology 2001) 3

No data available for Mastermind for LINC01748 Gene

Products for LINC01748 Gene

Sources for LINC01748 Gene