Aliases for LINC01748 Gene

Subcategory (RNA class) for LINC01748 Gene

lncRNA

Number of RNA Genes sources:

3 / 14

Aliases for LINC01748 Gene

  • Long Intergenic Non-Protein Coding RNA 1748 2 3 5
  • LINC01748 2 168
  • HSALNG0004004 167
  • NONHSAG001655 92

External Ids for LINC01748 Gene

Summaries for LINC01748 Gene

GeneCards Summary for LINC01748 Gene

LINC01748 (Long Intergenic Non-Protein Coding RNA 1748) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LINC01748 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LINC01748 Gene

Genomics for LINC01748 Gene

GeneHancer (GH) Regulatory Elements for LINC01748 Gene

Promoters and enhancers for LINC01748 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH01J060639 Promoter 0.9 Ensembl 500.7 +0.4 406 1.8 AFF1 CTBP1 NFRKB TAF9B NCOR1 ZNF316 ARNT POLR2H EHMT2 SKIL LINC01748 piR-33432-014 piR-45012-010 piR-47086-002
GH01J060619 Promoter/Enhancer 1.3 VISTA UCNEbase Ensembl ENCODE 0.4 +19.4 19420 2.2 WT1 FOS GLIS1 ZBTB12 POLR2A PKNOX1 SP7 piR-37895-004 LINC01748 piR-45012-010
GH01J060572 Enhancer 1 FANTOM5 Ensembl ENCODE 0.2 +65.8 65806 4.2 JUND FOXA2 TRIM24 FOS CEBPG CEBPB GTF2A2 JUN FOSL1 TAL1 lnc-C1orf87-6 lnc-NFIA-2 LINC01748
GH01J060596 Enhancer 0.7 Ensembl ENCODE 0.3 +43.2 43206 1.8 USF1 ZNF316 MAFF MAFK FOS CTCF MAFG GATA2 JUN EMSY lnc-C1orf87-6 LINC01748 lnc-NFIA-2
GH01J060638 Enhancer 0.3 Ensembl 0.7 +2.5 2506 0.4 DACH1 LINC01748 piR-45012-010 piR-37895-004
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC01748 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LINC01748 Gene

Genomic Locations for LINC01748 Gene
chr1:60,515,716-60,640,507
(GRCh38/hg38)
Size:
124,792 bases
Orientation:
Minus strand
chr1:61,005,921-61,106,163
(GRCh37/hg19)
Size:
100,243 bases
Orientation:
Minus strand

Genomic View for LINC01748 Gene

Genes around LINC01748 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LINC01748 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC01748 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC01748 Gene

Proteins for LINC01748 Gene

Post-translational modifications for LINC01748 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC01748 Gene

Domains & Families for LINC01748 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC01748 Gene

Function for LINC01748 Gene

Phenotypes From GWAS Catalog for LINC01748 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC01748 Gene

Localization for LINC01748 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC01748 Gene

Pathways & Interactions for LINC01748 Gene

PathCards logo

SuperPathways for LINC01748 Gene

No Data Available
;

Gene Ontology (GO) - Biological Process for LINC01748 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LINC01748 Gene

Drugs & Compounds for LINC01748 Gene

No Compound Related Data Available

Transcripts for LINC01748 Gene

mRNA/cDNA for LINC01748 Gene

32 RNACentral transcripts :
1 REFSEQ mRNAs :
1 NCBI additional mRNA sequence :
26 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
4 NONCODE transcripts :
7 LncBook transcripts :
9 LNCipedia transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC01748 Gene

No ASD Table

Relevant External Links for LINC01748 Gene

GeneLoc Exon Structure for
LINC01748

Expression for LINC01748 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC01748 Gene

Orthologs for LINC01748 Gene

Evolution for LINC01748 Gene

ENSEMBL:
Gene Tree for LINC01748 (if available)
TreeFam:
Gene Tree for LINC01748 (if available)

No data available for Orthologs for LINC01748 Gene

Paralogs for LINC01748 Gene

No data available for Paralogs for LINC01748 Gene

Variants for LINC01748 Gene

Additional dbSNP identifiers (rs#s) for LINC01748 Gene

Additional Variant Information for LINC01748 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC01748

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for LINC01748 Gene

Disorders for LINC01748 Gene

Additional Disease Information for LINC01748

No disorders were found for LINC01748 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC01748 Gene

Publications for LINC01748 Gene

  1. Antisense promoter of human L1 retrotransposon drives transcription of adjacent cellular genes. (PMID: 11238933) Speek M (Molecular and cellular biology 2001) 3 54

No data available for Mastermind for LINC01748 Gene

Products for LINC01748 Gene

Sources for LINC01748 Gene