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Aliases for LINC01748 Gene
Subcategory (RNA class) for LINC01748 Gene
lncRNA
Aliases for LINC01748 Gene
External Ids for LINC01748 Gene
- HGNC: 52535
- NCBI Entrez Gene: 105378763
- Ensembl: ENSG00000226476
Summaries for LINC01748 Gene
GeneCards Summary for LINC01748 Gene
LINC01748 (Long Intergenic Non-Protein Coding RNA 1748) is an RNA Gene, and is affiliated with the lncRNA class.
Additional gene information for LINC01748 Gene
- HGNC (52535)
- NCBI Entrez Gene (105378763)
- Ensembl (ENSG00000226476)
- Open Targets Platform(ENSG00000226476)
- Monarch Initiative
- Search for LINC01748 at DataMed
- Search for LINC01748 at HumanCyc
No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LINC01748 Gene
Genomics for LINC01748 Gene
GeneHancer (GH) Regulatory Elements Pubs
Promoters and enhancers for LINC01748 Gene
| GeneHancer (GH) Identifier | GH Type | GH Score |
GH Sources | Gene Association Score | Total Score | TSS distance (kb) | Number of Genes Away | Size (kb) | Transcription Factor Binding Sites |
Gene Targets |
|---|---|---|---|---|---|---|---|---|---|---|
| GH01J060639 | Promoter | 0.9 | Ensembl | 250.7 | +0.4 | 406 | 1.4 | MNT IKZF1 NONO ARNT NBN ZEB2 TAF9B SKIL ZNF316 SUPT5H | LINC01748 piR-33432-014 piR-47086-002 piR-45012-010 NFIA C1orf87 | |
| GH01J060622 | Promoter | 0.5 | EPDnew | 250.4 | +18.0 | 17958 | 0.1 | EGR2 ZFHX2 | LINC01748 piR-37895-004 piR-45012-010 NFIA C1orf87 | |
| GH01J060619 | Promoter/Enhancer | 1.3 | VISTA UCNEbase Ensembl ENCODE | 0.4 | +19.4 | 19420 | 2.2 | GLIS1 SP7 PKNOX1 ZBTB12 WT1 | piR-37895-004 piR-45012-010 LINC01748 NFIA C1orf87 | |
| GH01J060572 | Enhancer | 1 | FANTOM5 Ensembl ENCODE | 0.2 | +65.7 | 65736 | 4.1 | CEBPB FOXA2 TAL1 JUND FOSL1 ZBTB40 ZNF589 CEBPG TEAD4 ATF4 | lnc-C1orf87-6 lnc-NFIA-2 LINC01748 NFIA C1orf87 | |
| GH01J060638 | Enhancer | 0.3 | Ensembl | 0.7 | +2.5 | 2506 | 0.4 | DACH1 | LINC01748 piR-45012-010 piR-37895-004 NFIA C1orf87 |
- Elite GeneHancer and/or Elite GeneHancer-gene association
Download GeneHancer data from 2017 publication |
Request up-to-date GeneHancer data (full dataset)
GeneHancers around LINC01748 on the GeneHancer Hub at the UCSC Golden Path
Genomic Locations for LINC01748 Gene
Latest Assembly
- chr1:60,515,715-60,640,507
- (GRCh38/hg38)
- Size:
- 124,793 bases
- Orientation:
- Minus strand
Previous Assembly
- chr1:60,981,388-61,088,357
- (GRCh37/hg19 by Entrez Gene)
- Size:
- 106,970 bases
- Orientation:
- Minus strand
- chr1:61,005,921-61,106,163
- (GRCh37/hg19 by Ensembl)
- Size:
- 100,243 bases
- Orientation:
- Minus strand
Genomic View for LINC01748 Gene
Genes around LINC01748 on UCSC Golden Path with GeneCards custom track
LINC01748 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path
- Cytogenetic band:
-
- 1p32.1 by HGNC
- 1p32.1 by Entrez Gene
- 1p32.1 by Ensembl
LINC01748 Gene in genomic location: bands according to
Ensembl, locations according to GeneLoc
(and/or Entrez Gene and/or Ensembl if different)
Genomic Neighborhood
• Exon Structure
• Gene Density
RefSeq DNA sequence for LINC01748 Gene
Proteins for LINC01748 Gene
Post-translational modifications for LINC01748 Gene
No Post-translational modifications
No data available for DME Specific Peptides for LINC01748 Gene
Domains & Families for LINC01748 Gene
Gene Families for LINC01748 Gene
No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC01748 Gene
Function for LINC01748 Gene
Phenotypes From GWAS Catalog for LINC01748 Gene
CRISPR products for research
Inhibitory RNAs for research
Clone products for research
Cell Lines for research
No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC01748 Gene
Localization for LINC01748 Gene
No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC01748 Gene
Transcripts for LINC01748 Gene
Non-coding RNA (ncRNA) Transcripts from RNAcentral for LINC01748 Gene
| RNAcentral Transcript ID | Subcategory | Length (nts) | # of Sources | Source Identifiers and Annotations |
|---|---|---|---|---|
| URS00009C60F6_9606 | lncRNA | 3229 | 4 |
RefSeq: NR_146508, Ensembl: ENST00000634836 (view in UCSC) , LncBook: HSALNT0007828, LNCipedia: LINC01748:28, |
| URS000014220B_9606 | lncRNA | 1798 | 4 |
Ensembl: ENST00000439156 (view in UCSC) , LncBook: HSALNT0007849, LNCipedia: LINC01748:27, NONCODE: NONHSAT003590.2, |
| URS00009C6139_9606 | lncRNA | 2864 | 3 |
Ensembl: ENST00000634281 (view in UCSC) , LncBook: HSALNT0007850, LNCipedia: LINC01748:32, |
| URS00009C602B_9606 | lncRNA | 2143 | 2 |
Ensembl: ENST00000635616 (view in UCSC) , LNCipedia: LINC01748:30, |
| URS0000EF1840_9606 | lncRNA | 6038 | 1 |
Ensembl: ENST00000635048 (view in UCSC) , |
LINC01748 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path
Additional transcripts not in RNAcentral for LINC01748 Gene
- 1 NCBI additional mRNA sequence :
CRISPR products for research
Inhibitory RNAs for research
Clone products for research
Relevant External Links for LINC01748 Gene
- GeneLoc Exon Structure for
- LINC01748
Expression for LINC01748 Gene
No Expression Related Data Available
No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC01748 Gene
Orthologs for LINC01748 Gene
No data available for Orthologs for LINC01748 Gene
Paralogs for LINC01748 Gene
No data available for Paralogs for LINC01748 Gene
Variants for LINC01748 Gene
All consequence types are included: molecular consequences (e.g. missense, synonymous), and location-based (e.g. intron, upstream).
Additional Variant Information for LINC01748 Gene
- SNPedia medical, phenotypic, and genealogical associations of SNPs for
- LINC01748
No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for LINC01748 Gene
Disorders for LINC01748 Gene
Additional Disease Information for LINC01748
- Atlas
- ATLAS of Genetics and Cytogenetics in Oncology and Haematology
- Open Targets Platform
- Open Targets Platform
No disorders were found for LINC01748 Gene.
No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC01748 Gene
Publications for LINC01748 Gene
- Antisense promoter of human L1 retrotransposon drives transcription of adjacent cellular genes. (PMID: 11238933) Speek M (Molecular and cellular biology 2001) 3
No data available for Mastermind for LINC01748 Gene
Products for LINC01748 Gene
- Browse OriGene Antibodies
- Custom Antibody Services
- Browse OriGene ELISA Kits
- Custom Assay Services
- Search Origene for Purified Proteins, MassSpec and Protein Over-expression Lysates for LINC01748
- Origene Custom Protein Services for LINC01748
- Browse OriGene Inhibitory RNA Products For LINC01748
- Browse OriGene qPCR primer pairs and template standards
- Browse CRISPR knockouts for LINC01748
- Custom cloning services - gene synthesis, subcloning, mutagenesis, variant library, vector shuttling
- Browse OriGene miRNA Products For LINC01748
- Browse Sino Biological cDNA Clones
- Browse Sino Biological Recombinant Proteins
- Browse Sino Biological Cell Lysates
- Browse Sino Biological Antibodies
- Browse Sino Biological Assays
- Browse ELISA Kits
- Browse CRO Services
- High-throughput Antibody Production Service
- Protein Production Service
- Epitope Tag Antibodies & Reporter Protein Antibodies
- Lentiviral ORF Clones
- Browse GeneCopoeia Cell Lines
- Search GeneCopoeia for knockout CRISPR/Cas9 clones, lentivirus, and/or AAV products for LINC01748
- Search GeneCopoeia for ORF cDNA, lentivirus, AAV viral particles, and/or promoter clone products for LINC01748
- Search GeneCopoeia for miRNA 3'UTR Target clone products for LINC01748
- Search GeneCopoeia for shRNA, lentivirus, and/or AAV clone products for LINC01748
Sources for LINC01748 Gene
- (1) GeneCards
- (2) HGNC
- (3) NCBI Entrez Gene
- (4) UniProtKB/Swiss-Prot
- (5) Ensembl
- (6) OMIM® (Updated: 05-Mar-2021)
- (7) GeneLoc
- (8) Gene Wiki
- (9) UCSC
- (10) PhosphoSitePlus
- (11) Cell Signaling Technology
- (12) GO
- (13) UniProtKB/TrEMBL
- (14) InterPro
- (15) ProtoNet
- (16) Blocks
- (17) MGI
- (18) IUBMB
- (19) KEGG
- (20) MINT
- (21) STRING
- (22) IntAct
- (23) Novoseek
- (24) PharmGKB
- (25) DrugBank
- (26) HMDB
- (27) ASD
- (28) SAGE
- (29) SOURCE
- (30) HomoloGene
- (31) PanEnsembl
- (32) euGenes
- (33) SGD
- (34) FlyBase
- (35) WormBase
- (36) Pseudogene
- (37) DGV
- (38) dbSNP
- (39) GenAtlas
- (40) HGMD
- (41) GAD
- (42) BGMUT
- (43) HuGE
- (44) Atlas
- (45) GenBank
- (46) HORDE
- (47) HUGE
- (48) IMGT
- (49) Leiden
- (50) miRBase
- (51) DME
- (52) OriGene
- (53) PubMed
- (54) R&D Systems
- (55) TGDB
- (56) Tocris
- (57) Abcam
- (58) Novus Biologicals
- (59) ProSpec
- (60) Sino Biological
- (61) GenScript
- (62) Qiagen
- (63) OCA
- (64) Proteopedia
- (65) MOPED
- (66) neXtProt
- (67) Reactome
- (68) GeneGo (Thomson Reuters)
- (69) DISEASES
- (70) SIMAP
- (71) GenomeRNAi
- (72) LifeMap
- (73) miRTarBase
- (74) MalaCards
- (75) Invitrogen
- (76) BitterDB
- (77) ESI-BIO
- (78) RefSeq
- (79) BioSystems
- (80) MaxQB
- (81) IUPHAR
- (82) BioGPS
- (83) Illumina
- (84) COMPARTMENTS
- (85) HOMER
- (86) PaxDb
- (87) ApexBio
- (88) Addgene
- (89) antibodies-online
- (90) CYP
- (91) NONCODE
- (92) TreeFam
- (93) PathCards
- (94) GeneReviews
- (95) GeneTex
- (96) Taconic Biosciences
- (97) GTEx
- (98) ProteomicsDB
- (99) SCBT
- (100) DGIdb
- (101) ClinicalTrials
- (102) RVIS
- (103) SIGNOR
- (104) diseasecard
- (105) NIH Rare Diseases
- (106) Orphanet
- (107) UMLS
- (108) GTR
- (109) Disease Ontology
- (110) MedlinePlus Genetics
- (111) MeSH
- (112) MedlinePlus
- (113) CDC
- (114) NINDS
- (115) NCBI Bookshelf
- (116) ClinVar
- (117) Gene Damage Index
- (118) HPO
- (119) UDN
- (120) VISTA
- (121) FANTOM5
- (122) ENCODE
- (123) ProSci
- (124) Horizon
- (125) The Signaling Pathways Project (SPP)
- (126) IID
- (127) VectorBuilder
- (128) SNPedia
- (129) BRCA Exchange
- (130) CIViC
- (131) ProteoGenix
- (132) dbSUPER
- (133) TISSUES
- (134) Gene ORGANizer
- (135) abm
- (136) Human Protein Atlas
- (137) GWAS Catalog
- (138) Monarch Initiative
- (139) DataMed
- (140) HumanCyc
- (141) UCNEbase
- (142) EPDnew
- (143) Applied Biosystems
- (144) GlyConnect
- (145) Aminode
- (146) GeneCopoeia
- (147) GPS-Prot
- (148) RNAcentral
- (149) LncRNADisease
- (150) LOVD
- (151) miR2Disease
- (152) DiseaseEnhancer
- (153) Boster Bio
- (154) Biorbyt
- (155) Biocompare
- (156) Mastermind
- (157) CTD^2 Dashboard
- (158) CraniofacialAtlas
- (159) GeneImprint
- (160) Synthego
- (161) ENA
- (162) GtRNAdb
- (163) LncBase
- (164) LncBook
- (165) LNCipedia
- (166) Modomics
- (167) PDBe
- (168) Rfam
- (169) SILVA
- (170) snOPY
- (171) SRPDB
- (172) GENCODE
- (173) TarBase
- (174) Open Targets Platform
- (175) 5SRRNADB
- (176) snoDB
- (177) MirGeneDB