Aliases for LINC01746 Gene

Subcategory (RNA class) for LINC01746 Gene

lncRNA

Number of RNA Genes sources:

3 / 17

Aliases for LINC01746 Gene

  • Long Intergenic Non-Protein Coding RNA 1746 2 3 5
  • LINC01746 2 5 165
  • NONHSAG031732.2 91
  • HSALNG0129910 164

External Ids for LINC01746 Gene

Summaries for LINC01746 Gene

GeneCards Summary for LINC01746 Gene

LINC01746 (Long Intergenic Non-Protein Coding RNA 1746) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LINC01746 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LINC01746 Gene

Genomics for LINC01746 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for LINC01746 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH20J037567 Enhancer 0.8 ENCODE CraniofacialAtlas 0.7 -3.5 -3481 2 PRDM10 LEF1 KDM1A TCF7 TCF7L2 SIX4 ZNF366 GLIS1 ZNF274 E2F4 SNHG17 SNORA71C RBL1 RALGAPB RPRD1B TTI1 SNORA71A BLCAP LINC01746 piR-31432-413
GH20J037564 Enhancer 1 ENCODE CraniofacialAtlas 0.4 -6.9 -6854 0.9 CTCF TFE3 RCOR2 LARP7 ZNF143 RXRB REST RAD21 IRF2 TRIM22 LINC01746 piR-31432-413 BLCAP CTNNBL1
GH20J037565 Enhancer 0.7 ENCODE CraniofacialAtlas 0.4 -5.6 -5563 0.9 CTCF ZBTB25 ZNF205 ZFHX2 ZNF189 ZMYM3 CHD4 DMAP1 KDM1A ZNF48 VSTM2L LINC01746 piR-31432-413 BLCAP CTNNBL1
GH20J037575 Enhancer 0.7 Ensembl ENCODE 0.4 +5.0 5013 0.6 IKZF2 DPF2 HMBOX1 RELB RUNX3 IKZF1 SPI1 TBX21 MTA2 RAD21 LINC01746 lnc-BLCAP-4 BLCAP CTNNBL1
GH20J037597 Enhancer 0.9 ENCODE CraniofacialAtlas 0.3 +26.9 26911 2 RFX1 KDM1A PKNOX1 POLR2A REST KLF9 EGR1 BMI1 ZFHX2 KLF17 VSTM2L lnc-BLCAP-4 LINC01746 BLCAP CTNNBL1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC01746 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for LINC01746 Gene

Genomic Locations for LINC01746 Gene
chr20:37,571,088-37,591,493
(GRCh38/hg38)
Size:
20,406 bases
Orientation:
Plus strand

Genomic View for LINC01746 Gene

Genes around LINC01746 on UCSC Golden Path with GeneCards custom track
LINC01746 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
LINC01746 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC01746 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC01746 Gene

Proteins for LINC01746 Gene

Post-translational modifications for LINC01746 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC01746 Gene

Domains & Families for LINC01746 Gene

Gene Families for LINC01746 Gene

genes like me logo Genes that share domains with LINC01746: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC01746 Gene

Function for LINC01746 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC01746 Gene

Localization for LINC01746 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC01746 Gene

Pathways & Interactions for LINC01746 Gene

PathCards logo

SuperPathways for LINC01746 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LINC01746 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LINC01746 Gene

Drugs & Compounds for LINC01746 Gene

No Compound Related Data Available

Transcripts for LINC01746 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for LINC01746 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS000075F195_9606 lncRNA 449 4

Ensembl: ENST00000621390 (view in UCSC) ,

LncBook: HSALNT0266856,

LNCipedia: LINC01746:6,

NONCODE: NONHSAT188703.1,

URS0000EF50E1_9606 lncRNA 1157 2

HGNC: 52534,

Ensembl: ENST00000653260 (view in UCSC) ,

URS00008BAE5A_9606 lncRNA 378 3

LncBook: HSALNT0266857,

LNCipedia: LINC01746:7,

NONCODE: NONHSAT079626.2,

URS00008B5567_9606 lncRNA 375 3

LncBook: HSALNT0266858,

LNCipedia: LINC01746:8,

NONCODE: NONHSAT079627.2,

URS00008B2D23_9606 lncRNA 249 3

LncBook: HSALNT0266859,

LNCipedia: LINC01746:9,

NONCODE: NONHSAT079628.2,

LINC01746 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Alternative Splicing Database (ASD) splice patterns (SP) for LINC01746 Gene

No ASD Table

Relevant External Links for LINC01746 Gene

GeneLoc Exon Structure for
LINC01746

No data available for mRNA/cDNA for LINC01746 Gene

Expression for LINC01746 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for LINC01746

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC01746 Gene

Orthologs for LINC01746 Gene

Evolution for LINC01746 Gene

ENSEMBL:
Gene Tree for LINC01746 (if available)
TreeFam:
Gene Tree for LINC01746 (if available)

No data available for Orthologs for LINC01746 Gene

Paralogs for LINC01746 Gene

No data available for Paralogs for LINC01746 Gene

Variants for LINC01746 Gene

Additional dbSNP identifiers (rs#s) for LINC01746 Gene

Additional Variant Information for LINC01746 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC01746

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for LINC01746 Gene

Disorders for LINC01746 Gene

No disorders were found for LINC01746 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LINC01746 Gene

Publications for LINC01746 Gene

No publications were found for LINC01746 Gene.

No data available for Mastermind for LINC01746 Gene

Products for LINC01746 Gene

Sources for LINC01746 Gene