Aliases for LINC01740 Gene

Subcategory (RNA class) for LINC01740 Gene

lncRNA

Number of RNA Genes sources:

3 / 17

Aliases for LINC01740 Gene

  • Long Intergenic Non-Protein Coding RNA 1740 2 3 5
  • LINC01740 2 5 165
  • NONHSAG004234.2 91
  • HSALNG0010370 164

External Ids for LINC01740 Gene

Summaries for LINC01740 Gene

GeneCards Summary for LINC01740 Gene

LINC01740 (Long Intergenic Non-Protein Coding RNA 1740) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LINC01740 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LINC01740 Gene

Genomics for LINC01740 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for LINC01740 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH01J212545 Enhancer 0.6 ENCODE 600.7 +0.5 533 1.2 RNF2 ZNF512 PRDM1 FOXJ2 CEBPB USF1 CEBPG USF2 ATF3 HLF LINC01740 BATF3 RPL21P28 LINC02771 lnc-ATF3-1 ATF3 NENF
GH01J212449 Enhancer 0.7 ENCODE dbSUPER 8.8 -94.8 -94767 2 SCRT2 CREB1 SCRT1 POLR2A RCOR1 SMARCA4 ZBTB49 ATF2 GATA2 NENF LINC01740 PACC1 MG828462 ATF3
GH01J211630 Enhancer 1.4 Ensembl ENCODE dbSUPER 4.1 -913.5 -913503 4.4 HNRNPL GATAD2A PRDM10 TFE3 LEF1 IKZF1 JUND MTA2 PHF21A ZIC2 RCOR3 SLC30A1 RPL21P28 LINC01740 lnc-TRAF5-4 piR-61532-028 NEK2
GH01J212401 Enhancer 0.8 FANTOM5 Ensembl ENCODE 5.4 -143.6 -143593 3.8 IKZF2 JUN JUND MAFK NFE2L2 IKZF1 RF00017-470 PPP2R5A ATF3 PACC1 LINC02608 LINC01740
GH01J212542 Promoter/Enhancer 0.8 Ensembl ENCODE 0.7 -2.7 -2689 0.7 RNF2 IKZF2 EED SPI1 IKZF1 BATF3 LINC02771 LINC01740 ATF3 lnc-TMEM206-4 NENF
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC01740 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for LINC01740 Gene

Genomic Locations for LINC01740 Gene
chr1:212,545,694-212,556,066
(GRCh38/hg38)
Size:
10,373 bases
Orientation:
Plus strand
chr1:212,719,036-212,729,407
(GRCh37/hg19)
Size:
10,372 bases
Orientation:
Plus strand

Genomic View for LINC01740 Gene

Genes around LINC01740 on UCSC Golden Path with GeneCards custom track
LINC01740 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
LINC01740 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC01740 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC01740 Gene

Proteins for LINC01740 Gene

Post-translational modifications for LINC01740 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC01740 Gene

Domains & Families for LINC01740 Gene

Gene Families for LINC01740 Gene

genes like me logo Genes that share domains with LINC01740: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC01740 Gene

Function for LINC01740 Gene

Phenotypes From GWAS Catalog for LINC01740 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC01740 Gene

Localization for LINC01740 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC01740 Gene

Pathways & Interactions for LINC01740 Gene

PathCards logo

SuperPathways for LINC01740 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LINC01740 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LINC01740 Gene

Drugs & Compounds for LINC01740 Gene

No Compound Related Data Available

Transcripts for LINC01740 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for LINC01740 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS00007E35EF_9606 lncRNA 333 3

HGNC: 52528,

RefSeq: NR_125985,

LNCipedia: LINC01740:5,

URS00006221AB_9606 lncRNA 332 3

Ensembl: ENST00000423842 (view in UCSC) ,

LNCipedia: LINC01740:4,

NONCODE: NONHSAT009375.2,

URS00009C151D_9606 lncRNA 332 2

LncBook: HSALNT0021447,

NONCODE: NONHSAT150471.1,

LINC01740 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for LINC01740 Gene

2 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC01740 Gene

No ASD Table

Relevant External Links for LINC01740 Gene

GeneLoc Exon Structure for
LINC01740

Expression for LINC01740 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC01740 Gene

Orthologs for LINC01740 Gene

Evolution for LINC01740 Gene

ENSEMBL:
Gene Tree for LINC01740 (if available)
TreeFam:
Gene Tree for LINC01740 (if available)

No data available for Orthologs for LINC01740 Gene

Paralogs for LINC01740 Gene

No data available for Paralogs for LINC01740 Gene

Variants for LINC01740 Gene

Additional dbSNP identifiers (rs#s) for LINC01740 Gene

Additional Variant Information for LINC01740 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC01740

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for LINC01740 Gene

Disorders for LINC01740 Gene

Additional Disease Information for LINC01740

No disorders were found for LINC01740 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC01740 Gene

Publications for LINC01740 Gene

  1. Creation of genome-wide protein expression libraries using random activation of gene expression. (PMID: 11329013) Harrington JJ … Ducar M (Nature biotechnology 2001) 3

No data available for Mastermind for LINC01740 Gene

Products for LINC01740 Gene

Sources for LINC01740 Gene