Aliases for LINC01739 Gene

Data sources for LINC01739 Gene:

Subcategory (RNA class) for LINC01739 Gene

lncRNA

Aliases for LINC01739 Gene

External Ids for LINC01739 Gene

Summaries for LINC01739 Gene

GeneCards Summary for LINC01739 Gene

LINC01739 (Long Intergenic Non-Protein Coding RNA 1739) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LINC01739 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LINC01739 Gene

Genomics for LINC01739 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for LINC01739 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH01J063010 Promoter/Enhancer 1.1 EPDnew Ensembl ENCODE 250.2 +54.8 54782 0.6 FEZF1 ZIC2 FOXA2 ZBTB21 PKNOX1 ZNF629 OSR2 ZBTB17 EZH2 PRDM1 ENSG00000286455 LINC01739 ENSG00000227485 lnc-DOCK7-5 ATG4C FOXD3
GH01J063012 Promoter 0.7 EPDnew 250.2 +53.6 53586 0.1 CEBPA RXRA HNF4A SP1 NFIL3 HLF EGR1 YY1 ENSG00000286455 LINC01739 ENSG00000227485 lnc-DOCK7-5 ATG4C FOXD3
GH01J063055 Enhancer 0.4 Ensembl 0.4 +11.8 11764 0.2 MAFF MAFK EMSY lnc-DOCK7-4 HSALNG0004099 HSALNG0004095 LINC01739 ENSG00000229225 lnc-DOCK7-5 FOXD3 ATG4C
GH01J062998 Enhancer 0.8 VISTA UCNEbase 0.2 +66.7 66736 1.4 EZH2 HSALNG0004096 piR-50443-020 LINC01739 lnc-DOCK7-5 ATG4C FOXD3
GH01J062977 Enhancer 0.9 VISTA UCNEbase Ensembl 0.2 +87.8 87758 1.8 NFE2 piR-50443-020 HSALNG0004096 LINC01739 lnc-DOCK7-5 ATG4C FOXD3
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC01739 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for LINC01739 Gene

Latest Assembly
chr1:62,975,750-63,066,065
(GRCh38/hg38)
Size:
90,316 bases
Orientation:
Minus strand

Previous Assembly
chr1:63,466,168-63,478,142
(GRCh37/hg19 by Entrez Gene)
Size:
11,975 bases
Orientation:
Minus strand

chr1:63,466,168-63,478,142
(GRCh37/hg19 by Ensembl)
Size:
11,975 bases
Orientation:
Minus strand

Genomic View for LINC01739 Gene

Genes around LINC01739 on UCSC Golden Path with GeneCards custom track
LINC01739 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Cytogenetic band:
LINC01739 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC01739 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC01739 Gene

Proteins for LINC01739 Gene

Post-translational modifications for LINC01739 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC01739 Gene

Domains & Families for LINC01739 Gene

Gene Families for LINC01739 Gene

genes like me logo Genes that share domains with LINC01739: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC01739 Gene

Function for LINC01739 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC01739 Gene

Localization for LINC01739 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC01739 Gene

Pathways & Interactions for LINC01739 Gene

PathCards logo

SuperPathways for LINC01739 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LINC01739 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LINC01739 Gene

Drugs & Compounds for LINC01739 Gene

No Compound Related Data Available

Transcripts for LINC01739 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for LINC01739 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS00000AE08E_9606 lncRNA 492 3

Ensembl: ENST00000425352 (view in UCSC) ,

LNCipedia: LINC01739:8,

NONCODE: NONHSAT003649.2,

URS0000BDACB3_9606 lncRNA 1005 2

Ensembl: ENST00000641712 (view in UCSC) ,

LNCipedia: LINC01739:2,

URS0000BD4F61_9606 lncRNA 573 2

Ensembl: ENST00000641890 (view in UCSC) ,

LNCipedia: LINC01739:5,

URS0000430435_9606 lncRNA 445 2

Ensembl: ENST00000420659 (view in UCSC) ,

LNCipedia: LINC01739:7,

URS0000BC45BD_9606 lncRNA 490 1

RefSeq: NR_146605,

LINC01739 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for LINC01739 Gene

1 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC01739 Gene

No ASD Table

Relevant External Links for LINC01739 Gene

GeneLoc Exon Structure for
LINC01739

Expression for LINC01739 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC01739 Gene

Orthologs for LINC01739 Gene

Evolution for LINC01739 Gene

ENSEMBL:
Gene Tree for LINC01739 (if available)
TreeFam:
Gene Tree for LINC01739 (if available)

No data available for Orthologs for LINC01739 Gene

Paralogs for LINC01739 Gene

No data available for Paralogs for LINC01739 Gene

Variants for LINC01739 Gene

dbSNP identifiers (rs#s) for variants without ClinVar clinical significance for LINC01739 Gene

All consequence types are included: molecular consequences (e.g. missense, synonymous), and location-based (e.g. intron, upstream).

Additional Variant Information for LINC01739 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC01739

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for LINC01739 Gene

Disorders for LINC01739 Gene

Additional Disease Information for LINC01739

No disorders were found for LINC01739 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC01739 Gene

Publications for LINC01739 Gene

No publications were found for LINC01739 Gene.

No data available for Mastermind for LINC01739 Gene

Products for LINC01739 Gene

Sources for LINC01739 Gene