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Aliases for LINC01738 Gene

Subcategory (RNA class) for LINC01738 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for LINC01738 Gene

  • Long Intergenic Non-Protein Coding RNA 1738 2 3 5

External Ids for LINC01738 Gene

Previous GeneCards Identifiers for LINC01738 Gene

  • GC01U905656

Summaries for LINC01738 Gene

GeneCards Summary for LINC01738 Gene

LINC01738 (Long Intergenic Non-Protein Coding RNA 1738) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for LINC01738 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LINC01738 Gene

Genomics for LINC01738 Gene

GeneHancer (GH) Regulatory Elements for LINC01738 Gene

Promoters and enhancers for LINC01738 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH01I047690 Enhancer 0.9 dbSUPER 550.8 +2.0 1960 0.4 FEZF1 ZNF2 ZNF121 GLIS2 ZNF213 TSHZ1 ZNF488 ZNF623 ZNF518A GLIS1 LINC01738 GC01P047709 PIR52707
GH01I047687 Enhancer 0.6 ENCODE 550.8 -0.2 -222 2 PKNOX1 ZBTB6 ZNF133 ZFHX2 ZBTB48 POLR2A ZSCAN5C PRDM4 LINC01738 GC01P047675
GH01I047725 Enhancer 1.1 ENCODE dbSUPER 6.7 +39.3 39267 4.6 ZSCAN4 FEZF1 ZNF2 RAD21 ZNF335 ZNF213 ZSCAN5C ZNF143 RCOR1 FOS GC01M047709 ENSG00000272491 LINC01738 ENSG00000223814
GH01I047700 Enhancer 0.5 dbSUPER 7.5 +13.9 13941 2.9 OSR2 ZIC2 ZNF843 NR2F2 TCF7L2 FOXD2 FOXD2-AS1 LINC01738 GC01P047709 PIR52707
GH01I047722 Enhancer 0.5 dbSUPER 6.2 +35.0 34985 1.8 RXRA ZBTB48 HNF4A RAD21 GC01M047706 LINC01738 GC01P047718 GC01M047709
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around LINC01738 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LINC01738 Gene

Genomic Locations for LINC01738 Gene
chr1:47,688,463-47,703,383
(GRCh38/hg38)
Size:
14,921 bases
Orientation:
Plus strand
chr1:48,154,135-48,169,055
(GRCh37/hg19)

Genomic View for LINC01738 Gene

Genes around LINC01738 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LINC01738 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC01738 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC01738 Gene

Proteins for LINC01738 Gene

Post-translational modifications for LINC01738 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC01738 Gene

Domains & Families for LINC01738 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LINC01738 Gene

Function for LINC01738 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC01738 Gene

Localization for LINC01738 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC01738 Gene

Pathways & Interactions for LINC01738 Gene

SuperPathways for LINC01738 Gene

No Data Available

Interacting Proteins for LINC01738 Gene

Gene Ontology (GO) - Biological Process for LINC01738 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LINC01738 Gene

Drugs & Compounds for LINC01738 Gene

No Compound Related Data Available

Transcripts for LINC01738 Gene

mRNA/cDNA for LINC01738 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC01738 Gene

No ASD Table

Relevant External Links for LINC01738 Gene

GeneLoc Exon Structure for
LINC01738
ECgene alternative splicing isoforms for
LINC01738

Expression for LINC01738 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC01738 Gene

Orthologs for LINC01738 Gene

Evolution for LINC01738 Gene

ENSEMBL:
Gene Tree for LINC01738 (if available)
TreeFam:
Gene Tree for LINC01738 (if available)

No data available for Orthologs for LINC01738 Gene

Paralogs for LINC01738 Gene

No data available for Paralogs for LINC01738 Gene

Variants for LINC01738 Gene

Sequence variations from dbSNP and Humsavar for LINC01738 Gene

SNP ID Clin Chr 01 pos Variation AA Info Type
rs1000406361 -- 47,691,985(+) G/T intron_variant
rs1000523359 -- 47,692,737(+) T/C intron_variant
rs1000815504 -- 47,702,911(+) T/G non_coding_transcript_variant
rs1001022403 -- 47,699,975(+) A/T intron_variant
rs1001085835 -- 47,690,305(+) T/C intron_variant

Additional Variant Information for LINC01738 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC01738

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for LINC01738 Gene

Disorders for LINC01738 Gene

No disorders were found for LINC01738 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LINC01738 Gene

Publications for LINC01738 Gene

No publications were found for LINC01738 Gene.

Products for LINC01738 Gene

Sources for LINC01738 Gene

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