LINC01734 Gene (RNA Gene)

Long Intergenic Non-Protein Coding RNA 1734

GC20M039214
GIFtS:
9
See more...

Aliases for LINC01734 Gene

Subcategory (RNA class) for LINC01734 Gene

lncRNA

Number of RNA Genes sources:

3 / 17

Aliases for LINC01734 Gene

  • Long Intergenic Non-Protein Coding RNA 1734 2 3 5
  • LINC01734 5 165
  • NONHSAG031765.2 91
  • HSALNG0130047 164

External Ids for LINC01734 Gene

Summaries for LINC01734 Gene

GeneCards Summary for LINC01734 Gene

LINC01734 (Long Intergenic Non-Protein Coding RNA 1734) is an RNA Gene, and is affiliated with the lncRNA class. Diseases associated with LINC01734 include Parkinson Disease, Late-Onset.

Additional gene information for LINC01734 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LINC01734 Gene

Genomics for LINC01734 Gene

GeneHancer (GH) Regulatory Elements Pubs

Download GeneHancer 2017 data
Promoters and enhancers for LINC01734 Gene
GeneHancer (GH) Identifier GH Type GH
Score		 GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites		 Gene Targets
GH20J039225 Enhancer 0.3 dbSUPER 600.7 -1.4 -1396 2.2 CUX1 CTCF LINC01734 FAM83D DHX35 ENSG00000287983 lnc-DHX35-4
GH20J039230 Enhancer 0.3 dbSUPER 0.4 -7.2 -7157 2.5 ZNF282 ENSG00000287983 SNHG17 RALGAPB SNORA71A RN7SKP173 RPS3P2 SNORA71C LINC01734 lnc-DHX35-4 DHX35
GH20J039228 Enhancer 0.2 dbSUPER 0.7 -4.8 -4843 1.6 ENSG00000287983 LINC01734 lnc-DHX35-4 DHX35
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC01734 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for LINC01734 Gene

Genomic Locations for LINC01734 Gene
chr20:39,213,777-39,224,748
(GRCh38/hg38)
Size:
10,972 bases
Orientation:
Minus strand
chr20:37,842,420-37,853,391
(GRCh37/hg19)
Size:
10,972 bases
Orientation:
Minus strand

Genomic View for LINC01734 Gene

Genes around LINC01734 on UCSC Golden Path with GeneCards custom track
LINC01734 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
LINC01734 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC01734 Gene
GeneLoc Logo Genomic Neighborhood • Exon Structure • Gene Density

RefSeq DNA sequence for LINC01734 Gene

Proteins for LINC01734 Gene

Products:

  1. Antibody
  2. Protein
  3. Assay

Post-translational modifications for LINC01734 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC01734 Gene

Domains & Families for LINC01734 Gene

Gene Families for LINC01734 Gene

HGNC:
genes like me logo Genes that share domains with LINC01734: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC01734 Gene

Function for LINC01734 Gene

Products:

  1. Animal Model
  2. CRISPR
  3. miRNA
  4. Inhibitory RNA
  5. Clone
  6. Cell Line

Phenotypes From GWAS Catalog for LINC01734 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC01734 Gene

Localization for LINC01734 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC01734 Gene

Pathways & Interactions for LINC01734 Gene

PathCards logo

SuperPathways for LINC01734 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LINC01734 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LINC01734 Gene

Drugs & Compounds for LINC01734 Gene

Products:

  1. Drug
No Compound Related Data Available

Transcripts for LINC01734 Gene

Products:

  1. CRISPR
  2. miRNA
  3. Inhibitory RNA
  4. Clone

Non-coding RNA (ncRNA) Transcripts from RNAcentral for LINC01734 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS0000399B67_9606 lncRNA 1518 4

Ensembl: ENST00000412672 (view in UCSC) ,

LncBook: HSALNT0267102,

LNCipedia: LINC01734:5,

NONCODE: NONHSAT079712.2,

URS00008B6B85_9606 lncRNA 1514 1

LNCipedia: LINC01734:4,

LINC01734 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for LINC01734 Gene

1 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC01734 Gene

No ASD Table

Relevant External Links for LINC01734 Gene

GeneLoc Exon Structure for
LINC01734

Expression for LINC01734 Gene

Products:

  1. Primer

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for LINC01734

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC01734 Gene

Orthologs for LINC01734 Gene

Evolution for LINC01734 Gene

ENSEMBL:
Gene Tree for LINC01734 (if available)
TreeFam:
Gene Tree for LINC01734 (if available)

No data available for Orthologs for LINC01734 Gene

Paralogs for LINC01734 Gene

No data available for Paralogs for LINC01734 Gene

Variants for LINC01734 Gene

Additional dbSNP identifiers (rs#s) for LINC01734 Gene

Structural Variations from Database of Genomic Variants (DGV) for LINC01734 Gene

Variant ID Type Subtype PubMed ID
esv2762073 CNV gain 21179565
nsv1058684 CNV loss 25217958
nsv3375 CNV insertion 18451855
nsv522247 CNV gain 19592680
nsv833974 CNV gain 17160897

Additional Variant Information for LINC01734 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC01734

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for LINC01734 Gene

Disorders for LINC01734 Gene

MalaCards: The human disease database

(1) MalaCards diseases for LINC01734 Gene - From: LncRNADisease

Disorder Aliases PubMed IDs
parkinson disease, late-onset
  • pd
- elite association - COSMIC cancer census association via MalaCards

Additional Disease Information for LINC01734

ATLAS of Genetics and Cytogenetics in Oncology and Haematology
genes like me logo Genes that share disorders with LINC01734: view

No data available for UniProtKB/Swiss-Prot and Genatlas for LINC01734 Gene

Publications for LINC01734 Gene

  1. Genome-wide search for replicable risk gene regions in alcohol and nicotine co-dependence. (PMID: 22488850) Zuo L … Luo X (American journal of medical genetics. Part B, Neuropsychiatric genetics : the official publication of the International Society of Psychiatric Genetics 2012) 3
  2. Genome-wide association scan for survival on dialysis in African-Americans with type 2 diabetes. (PMID: 21546767) Murea M … Freedman BI (American journal of nephrology 2011) 3
  3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3

ExternalLinks

View latest publications for LINC01734 gene in Mastermind

Products for LINC01734 Gene

Sources for LINC01734 Gene