Aliases for LINC01725 Gene

Subcategory (RNA class) for LINC01725 Gene

lncRNA

Number of RNA Genes sources:

3 / 17

Aliases for LINC01725 Gene

  • Long Intergenic Non-Protein Coding RNA 1725 2 3 5
  • LINC01725 2 5 165
  • NONHSAG001930.2 91
  • HSALNG0004773 164
  • HSALNG0004771 164

External Ids for LINC01725 Gene

Previous GeneCards Identifiers for LINC01725 Gene

  • GC01M083577

Summaries for LINC01725 Gene

GeneCards Summary for LINC01725 Gene

LINC01725 (Long Intergenic Non-Protein Coding RNA 1725) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LINC01725 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LINC01725 Gene

Genomics for LINC01725 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for LINC01725 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH01J083860 Promoter/Enhancer 1.7 EPDnew Ensembl ENCODE CraniofacialAtlas 600.7 +0.2 200 1.6 CTCF ZNF692 RFX1 PKNOX1 REST ZNF341 MGA ZFX ZBTB20 GATAD2B LINC01725 LOC101927560 LOC107985041 TTLL7
GH01J083818 Enhancer 1 FANTOM5 Ensembl ENCODE 8.4 +41.9 41922 2.6 RFX1 SP1 FOXJ2 RFX3 BMI1 NR2C2 ZBTB33 JUND CEBPG NR2F1 LINC01725 CTBS MN308956 LOC101927560 TTLL7
GH01J083740 Enhancer 0.9 Ensembl ENCODE CraniofacialAtlas 5.2 +119.4 119399 2.4 GATAD2A CEBPA SOX13 EZH2 TEAD1 THAP11 KDM1A HMG20A SOX5 FOXA3 LINC01725 piR-59347-001 lnc-TTLL7-10 TTLL7
GH01J083760 Enhancer 0.8 Ensembl CraniofacialAtlas 5.2 +99.6 99622 2.4 CREB1 ZNF629 IKZF2 RELA DPF2 RUNX3 TCF12 ELF1 WT1 IKZF1 LINC01725 lnc-TTLL7-10 piR-59347-001 TTLL7
GH01J083845 Enhancer 0.7 Ensembl 5.9 +15.4 15422 0.4 CEBPG SP1 CEBPA CEBPB FOXA2 YY1 GABPA ZBTB33 JUND RAD21 LINC01725 LOC101927560 MN308956 TTLL7
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC01725 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for LINC01725 Gene

Genomic Locations for LINC01725 Gene
chr1:83,348,364-83,861,023
(GRCh38/hg38)
Size:
512,660 bases
Orientation:
Minus strand
chr1:84,041,459-84,326,706
(GRCh37/hg19)
Size:
285,248 bases
Orientation:
Minus strand

Genomic View for LINC01725 Gene

Genes around LINC01725 on UCSC Golden Path with GeneCards custom track
LINC01725 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
LINC01725 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC01725 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC01725 Gene

Proteins for LINC01725 Gene

Post-translational modifications for LINC01725 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC01725 Gene

Domains & Families for LINC01725 Gene

Gene Families for LINC01725 Gene

genes like me logo Genes that share domains with LINC01725: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC01725 Gene

Function for LINC01725 Gene

Phenotypes From GWAS Catalog for LINC01725 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC01725 Gene

Localization for LINC01725 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC01725 Gene

Pathways & Interactions for LINC01725 Gene

PathCards logo

SuperPathways for LINC01725 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LINC01725 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LINC01725 Gene

Drugs & Compounds for LINC01725 Gene

No Compound Related Data Available

Transcripts for LINC01725 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for LINC01725 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS000057EC58_9606 lncRNA 1991 4

RefSeq: NR_119374,

Ensembl: ENST00000457273 (view in UCSC) ,

LNCipedia: LINC01725:44,

NONCODE: NONHSAT004171.2,

URS000042F3C5_9606 lncRNA 400 4

Ensembl: ENST00000419733 (view in UCSC) ,

LncBook: HSALNT0009658,

LNCipedia: LINC01725:31,

NONCODE: NONHSAT004174.2,

URS00002F2DED_9606 lncRNA 3177 3

Ensembl: ENST00000417975 (view in UCSC) ,

LNCipedia: LINC01725:40,

NONCODE: NONHSAT004161.2,

URS00007599AD_9606 lncRNA 3166 3

HGNC: 52513,

RefSeq: NR_119375,

LNCipedia: LINC01725:16,

URS00002670A3_9606 lncRNA 471 3

Ensembl: ENST00000417565 (view in UCSC) ,

LNCipedia: LINC01725:43,

NONCODE: NONHSAT004173.2,

LINC01725 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for LINC01725 Gene

1 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC01725 Gene

No ASD Table

Relevant External Links for LINC01725 Gene

GeneLoc Exon Structure for
LINC01725

Expression for LINC01725 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for LINC01725

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC01725 Gene

Orthologs for LINC01725 Gene

Evolution for LINC01725 Gene

ENSEMBL:
Gene Tree for LINC01725 (if available)
TreeFam:
Gene Tree for LINC01725 (if available)

No data available for Orthologs for LINC01725 Gene

Paralogs for LINC01725 Gene

No data available for Paralogs for LINC01725 Gene

Variants for LINC01725 Gene

Additional dbSNP identifiers (rs#s) for LINC01725 Gene

Structural Variations from Database of Genomic Variants (DGV) for LINC01725 Gene

Variant ID Type Subtype PubMed ID
esv2133471 CNV deletion 18987734
esv2667790 CNV deletion 23128226
esv2669037 CNV deletion 23128226
esv2670590 CNV deletion 23128226
esv2671179 CNV deletion 23128226
esv2671930 CNV deletion 23128226
esv2714185 CNV deletion 23290073
esv2714196 CNV deletion 23290073
esv2714207 CNV deletion 23290073
esv29802 CNV loss 19812545
esv32823 CNV gain 17666407
esv3302865 CNV tandem duplication 20981092
esv33088 CNV loss 17666407
esv3309127 CNV mobile element insertion 20981092
esv33557 CNV gain 17666407
esv3357249 CNV insertion 20981092
esv3429649 CNV insertion 20981092
esv3565048 CNV deletion 23714750
esv3565059 CNV deletion 23714750
esv3565070 CNV deletion 23714750
esv3565104 CNV deletion 23714750
esv3565115 CNV deletion 23714750
esv3586646 CNV loss 21293372
esv3586647 CNV loss 21293372
esv3586649 CNV loss 21293372
esv3586650 CNV loss 21293372
esv3586652 CNV loss 21293372
esv3586654 CNV loss 21293372
esv3586655 CNV loss 21293372
esv3743 CNV loss 18987735
nsv1721 CNV insertion 18451855
nsv506939 OTHER sequence alteration 20534489
nsv506940 OTHER sequence alteration 20534489
nsv523508 CNV loss 19592680
nsv957215 CNV deletion 24416366

Additional Variant Information for LINC01725 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC01725

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for LINC01725 Gene

Disorders for LINC01725 Gene

No disorders were found for LINC01725 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC01725 Gene

Publications for LINC01725 Gene

  1. Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population. (PMID: 23251661) Comuzzie AG … Butte NF (PloS one 2012) 3
  2. Genome-wide scan of copy number variation in late-onset Alzheimer's disease. (PMID: 20061627) Heinzen EL … Goldstein DB (Journal of Alzheimer's disease : JAD 2010) 3
  3. Genome-wide association with select biomarker traits in the Framingham Heart Study. (PMID: 17903293) Benjamin EJ … Vasan RS (BMC medical genetics 2007) 3
  4. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3

Products for LINC01725 Gene

Sources for LINC01725 Gene