Aliases for LINC01719 Gene

Subcategory (RNA class) for LINC01719 Gene

lncRNA

Number of RNA Genes sources:

3 / 17

Aliases for LINC01719 Gene

  • Long Intergenic Non-Protein Coding RNA 1719 2 3 5
  • LINC01719 2 5 165
  • NONHSAG002696.2 91
  • HSALNG0006691 164
  • HSALNG0006652 164
  • HSALNG0006776 164

External Ids for LINC01719 Gene

Previous GeneCards Identifiers for LINC01719 Gene

  • GC01P146055
  • GC01P146062
  • GC01P146082
  • GC01P146110
  • GC01P146053

Summaries for LINC01719 Gene

GeneCards Summary for LINC01719 Gene

LINC01719 (Long Intergenic Non-Protein Coding RNA 1719) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LINC01719 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LINC01719 Gene

Genomics for LINC01719 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for LINC01719 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH01J146050 Promoter/Enhancer 2.3 EPDnew Ensembl ENCODE CraniofacialAtlas dbSUPER 612.9 -0.6 -590 3.3 ARHGAP35 SP1 CREB1 GATAD2A ZBTB33 HNRNPL ATF7 PRDM10 REST ZNF629 LINC01719 ENSG00000287190 RNVU1-6 POLR3C NBPF20 PIAS3 GPR89A ANKRD35 TRN-GTT20-1-001 LOC107985594
GH01J146034 Promoter/Enhancer 2 Ensembl ENCODE CraniofacialAtlas dbSUPER 6.3 -15.0 -14988 5.6 ZNF221 CEBPG CREB1 GATAD2A ARID3A ATF7 TEAD4 PRDM10 ZNF629 REST HJV MN296862 RF00017-314 TRH-GTG1-1 TRK-CTT2-1 TRE-CTC1-1 TRG-TCC2-1 piR-33123-002 piR-33161-001 piR-39017-001
GH01J146005 Promoter/Enhancer 1.4 Ensembl ENCODE dbSUPER 6.1 -45.7 -45692 2.4 CEBPG GATAD2A CTCF REST LEF1 JUND ZNF143 ZSCAN4 RAD21 IKZF2 GNRHR2 PEX11B ITGA10 ANKRD35 LINC01719 HSALNG0006699 TXNIP HJV
GH01J146058 Enhancer 0.2 Ensembl 0.4 +6.6 6634 0.8 ANKRD35 TRQ-CTG8-1-002 piR-30982-006 LINC01719 HJV NBPF10
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC01719 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for LINC01719 Gene

Genomic Locations for LINC01719 Gene
chr1:146,052,566-146,062,914
(GRCh38/hg38)
Size:
10,349 bases
Orientation:
Plus strand
chr1:145,373,054-145,382,434
(GRCh37/hg19)
Size:
9,381 bases
Orientation:
Minus strand

Genomic View for LINC01719 Gene

Genes around LINC01719 on UCSC Golden Path with GeneCards custom track
LINC01719 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
LINC01719 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC01719 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC01719 Gene

Proteins for LINC01719 Gene

Post-translational modifications for LINC01719 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC01719 Gene

Domains & Families for LINC01719 Gene

Gene Families for LINC01719 Gene

genes like me logo Genes that share domains with LINC01719: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC01719 Gene

Function for LINC01719 Gene

Phenotypes From GWAS Catalog for LINC01719 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC01719 Gene

Localization for LINC01719 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC01719 Gene

Pathways & Interactions for LINC01719 Gene

PathCards logo

SuperPathways for LINC01719 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LINC01719 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LINC01719 Gene

Drugs & Compounds for LINC01719 Gene

No Compound Related Data Available

Transcripts for LINC01719 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for LINC01719 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS00007E3AAF_9606 lncRNA 1039 3

HGNC: 52506,

RefSeq: NR_125967,

LNCipedia: LINC01719:21,

URS0000779634_9606 lncRNA 893 3

Ensembl: ENST00000610820 (view in UCSC) ,

LNCipedia: LINC01719:20,

NONCODE: NONHSAT149719.1,

URS000077C689_9606 lncRNA 656 3

Ensembl: ENST00000457465 (view in UCSC) ,

LNCipedia: LINC01719:33,

NONCODE: NONHSAT149722.1,

URS0000784678_9606 lncRNA 648 3

Ensembl: ENST00000452883 (view in UCSC) ,

LNCipedia: LINC01719:32,

NONCODE: NONHSAT005891.2,

URS0000778135_9606 lncRNA 538 3

Ensembl: ENST00000619720 (view in UCSC) ,

LNCipedia: LINC01719:26,

NONCODE: NONHSAT149721.1,

LINC01719 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for LINC01719 Gene

2 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC01719 Gene

No ASD Table

Relevant External Links for LINC01719 Gene

GeneLoc Exon Structure for
LINC01719

Expression for LINC01719 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC01719 Gene

Orthologs for LINC01719 Gene

Evolution for LINC01719 Gene

ENSEMBL:
Gene Tree for LINC01719 (if available)
TreeFam:
Gene Tree for LINC01719 (if available)

No data available for Orthologs for LINC01719 Gene

Paralogs for LINC01719 Gene

No data available for Paralogs for LINC01719 Gene

Variants for LINC01719 Gene

Additional dbSNP identifiers (rs#s) for LINC01719 Gene

Additional Variant Information for LINC01719 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC01719

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for LINC01719 Gene

Disorders for LINC01719 Gene

No disorders were found for LINC01719 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC01719 Gene

Publications for LINC01719 Gene

No publications were found for LINC01719 Gene.

Products for LINC01719 Gene

Sources for LINC01719 Gene