Aliases for LINC01712 Gene

Subcategory (RNA class) for LINC01712 Gene

lncRNA

Number of RNA Genes sources:

3 / 17

Aliases for LINC01712 Gene

  • Long Intergenic Non-Protein Coding RNA 1712 2 3 5
  • LINC01712 2 5 165
  • NONHSAG001931.2 91
  • HSALNG0004765 164

External Ids for LINC01712 Gene

Summaries for LINC01712 Gene

GeneCards Summary for LINC01712 Gene

LINC01712 (Long Intergenic Non-Protein Coding RNA 1712) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LINC01712 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LINC01712 Gene

Genomics for LINC01712 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for LINC01712 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH01J083486 Enhancer 0.9 Ensembl ENCODE dbSUPER 0.3 +41.4 41375 3.1 BACH1 RELA IKZF2 ARID3A DPF2 RELB NBN IKZF1 BMI1 TBX21 LOC107985037 LINC01712 LINC01725 TTLL7
GH01J083457 Enhancer 0.5 Ensembl 0.4 +12.1 12134 1.4 ZSCAN4 DPF2 NBN MTA2 TARDBP IKZF1 IKZF2 LINC01712 LOC107985037 LINC01725 TTLL7
GH01J083475 Enhancer 0.6 dbSUPER 0.3 +33.3 33252 6.6 TCF12 IKZF2 ARID3A RELB ZNF592 NBN IKZF1 MTA2 BHLHE40 ZNF217 LOC107985037 LINC01712 LINC01725 TTLL7
GH01J083484 Enhancer 0.3 Ensembl dbSUPER 0.3 +38.7 38734 0.2 LOC107985037 LINC01712 LINC01725 TTLL7
GH01J083460 Enhancer 0.2 Ensembl 0.4 +13.7 13734 0.2 LINC01712 LOC107985037 LINC01725 TTLL7
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC01712 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for LINC01712 Gene

Genomic Locations for LINC01712 Gene
chr1:83,445,967-83,480,024
(GRCh38/hg38)
Size:
34,058 bases
Orientation:
Plus strand
chr1:83,911,736-83,920,454
(GRCh37/hg19)
Size:
8,719 bases
Orientation:
Plus strand

Genomic View for LINC01712 Gene

Genes around LINC01712 on UCSC Golden Path with GeneCards custom track
LINC01712 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
LINC01712 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC01712 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC01712 Gene

Proteins for LINC01712 Gene

Post-translational modifications for LINC01712 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC01712 Gene

Domains & Families for LINC01712 Gene

Gene Families for LINC01712 Gene

genes like me logo Genes that share domains with LINC01712: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC01712 Gene

Function for LINC01712 Gene

Phenotypes From GWAS Catalog for LINC01712 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC01712 Gene

Localization for LINC01712 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC01712 Gene

Pathways & Interactions for LINC01712 Gene

PathCards logo

SuperPathways for LINC01712 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LINC01712 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LINC01712 Gene

Drugs & Compounds for LINC01712 Gene

No Compound Related Data Available

Transcripts for LINC01712 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for LINC01712 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS0000BC43FD_9606 lncRNA 735 2

HGNC: 52499,

RefSeq: NR_146478,

URS0000EF4517_9606 lncRNA 1373 1

Ensembl: ENST00000664539 (view in UCSC) ,

URS0000EF3BB5_9606 lncRNA 1189 1

Ensembl: ENST00000660423 (view in UCSC) ,

URS0000EEB45C_9606 lncRNA 1059 1

Ensembl: ENST00000446227 (view in UCSC) ,

URS00009C6046_9606 lncRNA 1044 2

LncBook: HSALNT0009611,

LNCipedia: LINC01712:6,

LINC01712 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for LINC01712 Gene

1 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC01712 Gene

No ASD Table

Relevant External Links for LINC01712 Gene

GeneLoc Exon Structure for
LINC01712

Expression for LINC01712 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC01712 Gene

Orthologs for LINC01712 Gene

Evolution for LINC01712 Gene

ENSEMBL:
Gene Tree for LINC01712 (if available)
TreeFam:
Gene Tree for LINC01712 (if available)

No data available for Orthologs for LINC01712 Gene

Paralogs for LINC01712 Gene

No data available for Paralogs for LINC01712 Gene

Variants for LINC01712 Gene

Additional dbSNP identifiers (rs#s) for LINC01712 Gene

Additional Variant Information for LINC01712 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC01712

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for LINC01712 Gene

Disorders for LINC01712 Gene

Additional Disease Information for LINC01712

No disorders were found for LINC01712 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC01712 Gene

Publications for LINC01712 Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3

No data available for Mastermind for LINC01712 Gene

Products for LINC01712 Gene

Sources for LINC01712 Gene