Aliases for LINC01709 Gene

Data sources for LINC01709 Gene:

RNA type for LINC01709 Gene

lncRNA

Aliases for LINC01709 Gene

External Ids for LINC01709 Gene

Previous GeneCards Identifiers for LINC01709 Gene

  • GC01P101640

Summaries for LINC01709 Gene

GeneCards Summary for LINC01709 Gene

LINC01709 (Long Intergenic Non-Protein Coding RNA 1709) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LINC01709 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LINC01709 Gene

Genomics for LINC01709 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for LINC01709 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH01J101639 Promoter 0.3 EPDnew 250.3 +39.3 39335 0.1 LINC01709 HSALNG0005592 HSALNG0005590 RNU6-965P OLFM3 S1PR1
GH01J101653 Enhancer 0.6 Ensembl ENCODE 0.2 +53.9 53882 2.2 CTCF YY1 RAD21 SMC3 HSALNG0005592 HSALNG0005590 LINC01709 RNU6-965P OLFM3 S1PR1
GH01J101632 Enhancer 0.4 Ensembl 0.3 +32.7 32681 1 MAFF ZNF316 MAFK MAFG HSALNG0005592 LINC01709 HSALNG0005590 RNU6-965P OLFM3 S1PR1
GH01J101613 Enhancer 0.3 Ensembl 0.4 +13.6 13581 0.8 NFE2 HNRNPA1P68 piR-38256-001 HSALNG0005590 LINC01709 HSALNG0005592 S1PR1 OLFM3
GH01J101618 Enhancer 0.3 Ensembl 0.4 +18.8 18781 0.4 EP300 HSALNG0005592 LINC01709 HSALNG0005590 piR-38256-001 OLFM3 S1PR1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC01709 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for LINC01709 Gene

Latest Assembly
chr1:101,600,220-101,811,760
(GRCh38/hg38)
Size:
211,541 bases
Orientation:
Plus strand

Previous Assembly
chr1:102,189,298-102,195,170
(GRCh37/hg19 by Ensembl)
Size:
5,873 bases
Orientation:
Plus strand

Genomic View for LINC01709 Gene

Genes around LINC01709 on UCSC Golden Path with GeneCards custom track
LINC01709 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Cytogenetic band:
LINC01709 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC01709 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC01709 Gene

Proteins for LINC01709 Gene

Post-translational modifications for LINC01709 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC01709 Gene

Domains & Families for LINC01709 Gene

Gene Families for LINC01709 Gene

genes like me logo Genes that share domains with LINC01709: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC01709 Gene

Function for LINC01709 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC01709 Gene

Localization for LINC01709 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC01709 Gene

Pathways & Interactions for LINC01709 Gene

PathCards logo

SuperPathways for LINC01709 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LINC01709 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LINC01709 Gene

Drugs & Compounds for LINC01709 Gene

No Compound Related Data Available

Transcripts for LINC01709 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for LINC01709 Gene

RNAcentral Transcript ID RNA Type Length (nts) # of Sources Source Identifiers and Annotations
URS00009C5FF0_9606 lncRNA 637 3

Ensembl: ENST00000415532 (view in UCSC) ,

LncBook: HSALNT0011630,

LNCipedia: LINC01709:6,

URS00009C605B_9606 lncRNA 1204 2

Ensembl: ENST00000635702 (view in UCSC) ,

LNCipedia: LINC01709:7,

URS0000DB823E_9606 lncRNA 1726 1

Ensembl: ENST00000648951 (view in UCSC) ,

URS0000EEF7C4_9606 lncRNA 1550 1

Ensembl: ENST00000666574 (view in UCSC) ,

URS0000EF5A02_9606 lncRNA 1373 1

Ensembl: ENST00000657394 (view in UCSC) ,

LINC01709 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Alternative Splicing Database (ASD) splice patterns (SP) for LINC01709 Gene

No ASD Table

Relevant External Links for LINC01709 Gene

GeneLoc Exon Structure for
LINC01709

No data available for mRNA/cDNA for LINC01709 Gene

Expression for LINC01709 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC01709 Gene

Orthologs for LINC01709 Gene

Evolution for LINC01709 Gene

ENSEMBL:
Gene Tree for LINC01709 (if available)
TreeFam:
Gene Tree for LINC01709 (if available)
Alliance of Genome Resources:
Additional Orthologs for LINC01709

No data available for Orthologs for LINC01709 Gene

Paralogs for LINC01709 Gene

No data available for Paralogs for LINC01709 Gene

Variants for LINC01709 Gene

dbSNP identifiers (rs#s) for variants without ClinVar clinical significance for LINC01709 Gene

All consequence types are included: molecular consequences (e.g. missense, synonymous), and location-based (e.g. intron, upstream).

Additional Variant Information for LINC01709 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC01709
Leiden Open Variation Database (LOVD)
LINC01709

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for LINC01709 Gene

Disorders for LINC01709 Gene

Additional Disease Information for LINC01709

Open Targets Platform
Open Targets Platform

No disorders were found for LINC01709 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC01709 Gene

Publications for LINC01709 Gene

No publications were found for LINC01709 Gene.

No data available for Mastermind for LINC01709 Gene

Products for LINC01709 Gene

Sources for LINC01709 Gene