Aliases for LINC01707 Gene

Subcategory (RNA class) for LINC01707 Gene

lncRNA

Number of RNA Genes sources:

3 / 17

Aliases for LINC01707 Gene

  • Long Intergenic Non-Protein Coding RNA 1707 2 3 5
  • LINC01707 2 5 165
  • NONHSAG001779.2 91
  • HSALNG0004343 164

External Ids for LINC01707 Gene

Summaries for LINC01707 Gene

GeneCards Summary for LINC01707 Gene

LINC01707 (Long Intergenic Non-Protein Coding RNA 1707) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LINC01707 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LINC01707 Gene

Genomics for LINC01707 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for LINC01707 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH01J069055 Promoter/Enhancer 0.6 EPDnew Ensembl 618.1 -0.3 -338 1 ZNF687 LINC01707 lnc-DEPDC1-1 LRRC7 DEPDC1
GH01J069077 Enhancer 0.6 Ensembl ENCODE 0.4 +22.0 22001 1.1 SMARCA4 NANOG POU5F1 piR-32810-003 LINC01707 piR-54324-002 LRRC7 DEPDC1
GH01J069080 Enhancer 0.4 Ensembl 0.3 +26.3 26263 1.8 POLR2A EZH2 NR2F2 BACH1 piR-32810-003 piR-54324-002 LINC01707 LRRC7 DEPDC1
GH01J069078 Enhancer 0.3 Ensembl ENCODE 0.4 +20.8 20767 1.2 piR-32810-003 LINC01707 piR-54324-002 LRRC7 DEPDC1
GH01J069086 Enhancer 0.3 Ensembl 0.3 +30.8 30763 1.2 RCOR1 piR-54324-002 piR-32810-003 LINC01707 LRRC7 DEPDC1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC01707 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for LINC01707 Gene

Genomic Locations for LINC01707 Gene
chr1:69,055,838-69,229,607
(GRCh38/hg38)
Size:
173,770 bases
Orientation:
Plus strand
chr1:69,521,581-69,650,686
(GRCh37/hg19)
Size:
129,106 bases
Orientation:
Plus strand

Genomic View for LINC01707 Gene

Genes around LINC01707 on UCSC Golden Path with GeneCards custom track
LINC01707 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
LINC01707 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC01707 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC01707 Gene

Proteins for LINC01707 Gene

Post-translational modifications for LINC01707 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC01707 Gene

Domains & Families for LINC01707 Gene

Gene Families for LINC01707 Gene

genes like me logo Genes that share domains with LINC01707: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC01707 Gene

Function for LINC01707 Gene

Phenotypes From GWAS Catalog for LINC01707 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC01707 Gene

Localization for LINC01707 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC01707 Gene

Pathways & Interactions for LINC01707 Gene

PathCards logo

SuperPathways for LINC01707 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LINC01707 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LINC01707 Gene

Drugs & Compounds for LINC01707 Gene

No Compound Related Data Available

Transcripts for LINC01707 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for LINC01707 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS0000064F89_9606 lncRNA 627 4

Ensembl: ENST00000425517 (view in UCSC) ,

LncBook: HSALNT0008602,

LNCipedia: LINC01707:3,

NONCODE: NONHSAT003832.2,

URS0000BC465A_9606 lncRNA 626 2

HGNC: 52495,

RefSeq: NR_146608,

URS0000EEC9FE_9606 lncRNA 3539 1

Ensembl: ENST00000667299 (view in UCSC) ,

URS0000EF4C2F_9606 lncRNA 1454 1

Ensembl: ENST00000661832 (view in UCSC) ,

URS0000EEFF48_9606 lncRNA 1057 1

Ensembl: ENST00000667473 (view in UCSC) ,

LINC01707 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for LINC01707 Gene

1 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC01707 Gene

No ASD Table

Relevant External Links for LINC01707 Gene

GeneLoc Exon Structure for
LINC01707

Expression for LINC01707 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC01707 Gene

Orthologs for LINC01707 Gene

Evolution for LINC01707 Gene

ENSEMBL:
Gene Tree for LINC01707 (if available)
TreeFam:
Gene Tree for LINC01707 (if available)

No data available for Orthologs for LINC01707 Gene

Paralogs for LINC01707 Gene

No data available for Paralogs for LINC01707 Gene

Variants for LINC01707 Gene

Additional dbSNP identifiers (rs#s) for LINC01707 Gene

Additional Variant Information for LINC01707 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC01707

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for LINC01707 Gene

Disorders for LINC01707 Gene

Additional Disease Information for LINC01707

No disorders were found for LINC01707 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC01707 Gene

Publications for LINC01707 Gene

No publications were found for LINC01707 Gene.

No data available for Mastermind for LINC01707 Gene

Products for LINC01707 Gene

Sources for LINC01707 Gene