LINC01705 Gene (RNA Gene)

Long Intergenic Non-Protein Coding RNA 1705

GC01M222042
GIFtS:
8
See more...

Aliases for LINC01705 Gene

Subcategory (RNA class) for LINC01705 Gene

lncRNA

Number of RNA Genes sources:

3 / 17

Aliases for LINC01705 Gene

  • Long Intergenic Non-Protein Coding RNA 1705 2 3 5
  • LINC01705 2 5 165
  • RP11-400N13.3 2 3
  • NONHSAG004373.2 91
  • HSALNG0010821 164

External Ids for LINC01705 Gene

Previous GeneCards Identifiers for LINC01705 Gene

  • GC01U905657

Summaries for LINC01705 Gene

GeneCards Summary for LINC01705 Gene

LINC01705 (Long Intergenic Non-Protein Coding RNA 1705) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LINC01705 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LINC01705 Gene

Genomics for LINC01705 Gene

GeneHancer (GH) Regulatory Elements Pubs

Download GeneHancer 2017 data
Promoters and enhancers for LINC01705 Gene
GeneHancer (GH) Identifier GH Type GH
Score		 GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites		 Gene Targets
GH01J222064 Promoter/Enhancer 0.9 EPDnew Ensembl ENCODE 605.5 -0.2 -228 1.2 FOSL1 ZNF707 ATF3 FOS LINC01705 piR-58537-003 HHIPL2 HSALNG0010830 DUSP10
GH01J222047 Enhancer 0.9 Ensembl ENCODE 11.7 +16.5 16472 2.2 SP1 RELA IKZF2 TRIM22 PKNOX1 EED DPF2 RELB JUND RUNX3 LINC01705 piR-39099-027 RF01061-023 DUSP10 HHIPL2
GH01J222042 Enhancer 0.8 Ensembl ENCODE 10.8 +20.3 20272 5 POLR2A PKNOX1 CEBPB FOS ZNF335 RCOR1 JUND YY1 CHD2 ZNF518A LINC02474 LINC01705 RNU6-403P LINC02257 piR-39099-027 RF01061-023 DUSP10 HHIPL2
GH01J221986 Enhancer 1.5 FANTOM5 Ensembl ENCODE dbSUPER 4.8 +72.8 72808 11.3 CREB1 CTCF ZNF629 LEF1 IKZF1 JUND MTA2 RELA PKNOX1 MTA1 DUSP10 LINC02257 LINC02474 RNU6-403P LINC01705 ENSG00000229399 RF01061-023 HHIPL2
GH01J221978 Promoter/Enhancer 1.1 FANTOM5 Ensembl ENCODE 4.6 +87.6 87637 5.1 CTCF TEAD4 PKNOX1 RAD21 EGR1 SMC3 CUX1 CEBPB ZBTB33 MEIS2 LINC02257 piR-36770-010 piR-37432-012 piR-37656-020 LINC02474 LINC01705 ENSG00000229399 DUSP10 HHIPL2
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC01705 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for LINC01705 Gene

Genomic Locations for LINC01705 Gene
chr1:222,010,825-222,064,773
(GRCh38/hg38)
Size:
53,949 bases
Orientation:
Minus strand
chr1:222,215,047-222,238,105
(GRCh37/hg19)
Size:
23,059 bases
Orientation:
Minus strand

Genomic View for LINC01705 Gene

Genes around LINC01705 on UCSC Golden Path with GeneCards custom track
LINC01705 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
LINC01705 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC01705 Gene
GeneLoc Logo Genomic Neighborhood • Exon Structure • Gene Density

RefSeq DNA sequence for LINC01705 Gene

Proteins for LINC01705 Gene

Products:

  1. Antibody
  2. Protein
  3. Assay

Post-translational modifications for LINC01705 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC01705 Gene

Domains & Families for LINC01705 Gene

Gene Families for LINC01705 Gene

HGNC:
genes like me logo Genes that share domains with LINC01705: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC01705 Gene

Function for LINC01705 Gene

Products:

  1. Animal Model
  2. CRISPR
  3. miRNA
  4. Inhibitory RNA
  5. Clone
  6. Cell Line

Phenotypes From GWAS Catalog for LINC01705 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC01705 Gene

Localization for LINC01705 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC01705 Gene

Pathways & Interactions for LINC01705 Gene

PathCards logo

SuperPathways for LINC01705 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LINC01705 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LINC01705 Gene

Drugs & Compounds for LINC01705 Gene

Products:

  1. Drug
No Compound Related Data Available

Transcripts for LINC01705 Gene

Products:

  1. CRISPR
  2. miRNA
  3. Inhibitory RNA
  4. Clone

Non-coding RNA (ncRNA) Transcripts from RNAcentral for LINC01705 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS000014967E_9606 lncRNA 562 3

Ensembl: ENST00000438158 (view in UCSC) ,

LNCipedia: LINC01705:3,

NONCODE: NONHSAT009653.2,

URS0000EEB8A4_9606 lncRNA 1070 2

HGNC: 52493,

Ensembl: ENST00000658927 (view in UCSC) ,

URS0000EEE94F_9606 lncRNA 873 1

Ensembl: ENST00000668844 (view in UCSC) ,

URS00009BE1AB_9606 lncRNA 562 2

LncBook: HSALNT0022483,

NONCODE: NONHSAT153001.1,

LINC01705 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Alternative Splicing Database (ASD) splice patterns (SP) for LINC01705 Gene

No ASD Table

Relevant External Links for LINC01705 Gene

GeneLoc Exon Structure for
LINC01705

No data available for mRNA/cDNA for LINC01705 Gene

Expression for LINC01705 Gene

Products:

  1. Primer
No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC01705 Gene

Orthologs for LINC01705 Gene

Evolution for LINC01705 Gene

ENSEMBL:
Gene Tree for LINC01705 (if available)
TreeFam:
Gene Tree for LINC01705 (if available)

No data available for Orthologs for LINC01705 Gene

Paralogs for LINC01705 Gene

No data available for Paralogs for LINC01705 Gene

Variants for LINC01705 Gene

Additional dbSNP identifiers (rs#s) for LINC01705 Gene

Additional Variant Information for LINC01705 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC01705

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for LINC01705 Gene

Disorders for LINC01705 Gene

Additional Disease Information for LINC01705

Open Targets Platform

No disorders were found for LINC01705 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC01705 Gene

Publications for LINC01705 Gene

  1. Identification of differential expression lncRNAs in gastric cancer using transcriptome sequencing and bioinformatics analyses. (PMID: 29693709) Wang Y … Zhang J (Molecular medicine reports 2018) 2 3

ExternalLinks

View latest publications for LINC01705 gene in Mastermind

Products for LINC01705 Gene

Sources for LINC01705 Gene