LINC01700 Gene (RNA Gene)

Long Intergenic Non-Protein Coding RNA 1700

GC21M038975
GIFtS:
10

Aliases for LINC01700 Gene

Subcategory (RNA class) for LINC01700 Gene

lncRNA

Quality Score for this RNA gene is

15

Aliases for LINC01700 Gene

  • Long Intergenic Non-Protein Coding RNA 1700 2 3 5
  • LINC01700 2 170
  • HSALNG0133099 169
  • NONHSAG032851 94

External Ids for LINC01700 Gene

Summaries for LINC01700 Gene

GeneCards Summary for LINC01700 Gene

LINC01700 (Long Intergenic Non-Protein Coding RNA 1700) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LINC01700 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LINC01700 Gene

Genomics for LINC01700 Gene

GeneHancer (GH) Regulatory Elements for LINC01700 Gene

Promoters and enhancers for LINC01700 Gene
GeneHancer (GH) Identifier GH Type GH
Score		 GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites		 Gene Targets
GH21J038974 Enhancer 0.3 Ensembl dbSUPER 750.6 +0.9 874 0.6 LINC01700 lnc-ETS2-9
GH21J038983 Promoter/Enhancer 2.3 VISTA FANTOM5 Ensembl ENCODE CraniofacialAtlas dbSUPER 0.4 -11.8 -11815 11.6 ZBTB6 MLX RBPJ SMARCE1 CTBP1 MIXL1 RUNX1 ZNF362 MYC CC2D1A HMGN1 RNF6P1 MYL6P2 DSCR10 ENSG00000270835 DSCR4 DSCR4-IT1 BRWD1 GET1 DSCR8
GH21J038978 Enhancer 1.1 FANTOM5 ENCODE dbSUPER 0.6 -3.2 -3167 4.7 SP1 SP7 ZIC2 NFE2 ZBTB20 SCRT2 OSR2 ELF1 SCRT1 MAFG ETS2 LINC01700 lnc-ETS2-4
GH21J038964 Enhancer 1.6 FANTOM5 Ensembl ENCODE CraniofacialAtlas dbSUPER 0.4 +11.7 11706 2.3 SREBF1 ZBTB6 LCORL MLX RBPJ USF2 NR2F6 CC2D1A NFYC ELF1 lnc-ETS2-9 LINC01700
GH21J039002 Promoter/Enhancer 1.4 Ensembl ENCODE CraniofacialAtlas dbSUPER 0.3 -27.8 -27816 5.5 RAD21 TEAD4 SP1 MLLT1 SMARCA4 IKZF1 CREB1 ZIC2 RFX1 ATF1 lnc-ETS2-4 LOC102724740 LINC01700 ENSG00000235888
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC01700 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LINC01700 Gene

Genomic Locations for LINC01700 Gene
chr21:38,969,831-38,977,775
(GRCh38/hg38)
Size:
7,945 bases
Orientation:
Minus strand
chr21:40,346,355-40,349,700
(GRCh37/hg19)
Size:
3,346 bases
Orientation:
Minus strand

Genomic View for LINC01700 Gene

Genes around LINC01700 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LINC01700 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC01700 Gene
GeneLoc Logo Genomic Neighborhood • Exon Structure • Gene Density

RefSeq DNA sequence for LINC01700 Gene

Proteins for LINC01700 Gene

Products:

  1. Antibody
  2. Protein
  3. Assay

Post-translational modifications for LINC01700 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC01700 Gene

Domains & Families for LINC01700 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC01700 Gene

Function for LINC01700 Gene

Products:

  1. Animal Model
  2. CRISPR
  3. miRNA
  4. Inhibitory RNA
  5. Clone
  6. Cell Line

Phenotypes From GWAS Catalog for LINC01700 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC01700 Gene

Localization for LINC01700 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC01700 Gene

Pathways & Interactions for LINC01700 Gene

PathCards logo

SuperPathways for LINC01700 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LINC01700 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LINC01700 Gene

Drugs & Compounds for LINC01700 Gene

Products:

  1. Drug
No Compound Related Data Available

Transcripts for LINC01700 Gene

Products:

  1. CRISPR
  2. miRNA
  3. Inhibitory RNA
  4. Clone

mRNA/cDNA for LINC01700 Gene

(1) REFSEQ mRNAs :
(1) Additional mRNA sequences :
(1) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
(3) RNACentral transcripts :
(1) LNCipedia transcripts :
(2) NONCODE transcripts :
(1) LncBook transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC01700 Gene

No ASD Table

Relevant External Links for LINC01700 Gene

GeneLoc Exon Structure for
LINC01700
ECgene alternative splicing isoforms for
LINC01700

Expression for LINC01700 Gene

Products:

  1. Primer
No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC01700 Gene

Orthologs for LINC01700 Gene

Evolution for LINC01700 Gene

ENSEMBL:
Gene Tree for LINC01700 (if available)
TreeFam:
Gene Tree for LINC01700 (if available)

No data available for Orthologs for LINC01700 Gene

Paralogs for LINC01700 Gene

No data available for Paralogs for LINC01700 Gene

Variants for LINC01700 Gene

Sequence variations from dbSNP and Humsavar for LINC01700 Gene

SNP ID Clin Chr 21 pos Variation AA Info Type
rs1000000334 -- 38,974,214(-) T/C downstream_transcript_variant
rs1000650120 -- 38,977,805(-) A/T upstream_transcript_variant
rs1000887838 -- 38,978,661(-) G/A upstream_transcript_variant
rs1001434588 -- 38,979,644(-) C/T upstream_transcript_variant
rs1001489524 -- 38,979,378(-) C/A upstream_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for LINC01700 Gene

Variant ID Type Subtype PubMed ID
esv2677138 CNV deletion 23128226
esv3647012 CNV loss 21293372
nsv587477 CNV loss 21841781

Additional Variant Information for LINC01700 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC01700

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for LINC01700 Gene

Disorders for LINC01700 Gene

Additional Disease Information for LINC01700

ATLAS of Genetics and Cytogenetics in Oncology and Haematology

No disorders were found for LINC01700 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC01700 Gene

Publications for LINC01700 Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3 56

No data available for External Links for LINC01700 Gene

Products for LINC01700 Gene

Sources for LINC01700 Gene