Aliases for LINC01699 Gene

Data sources for LINC01699 Gene:

Subcategory (RNA class) for LINC01699 Gene

lncRNA

Aliases for LINC01699 Gene

External Ids for LINC01699 Gene

Summaries for LINC01699 Gene

GeneCards Summary for LINC01699 Gene

LINC01699 (Long Intergenic Non-Protein Coding RNA 1699) is an RNA Gene, and is affiliated with the lncRNA class. Diseases associated with LINC01699 include Thrombocytopenia-Absent Radius Syndrome.

Additional gene information for LINC01699 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LINC01699 Gene

Genomics for LINC01699 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for LINC01699 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH01J181216 Enhancer 0.4 Ensembl ENCODE 0.4 -19.6 -19586 0.4 EP300 LINC01699 piR-61514-025 CACNA1E IER5
GH01J181239 Enhancer 0.2 Ensembl 0.7 +2.9 2914 0.6 CACNA1E LINC01699 piR-46847-021 IER5
GH01J181205 Enhancer 0.3 Ensembl 0.3 -29.6 -29586 2 RFX1 LHX4 piR-61514-025 LINC01699 CACNA1E IER5
GH01J181208 Enhancer 0.3 Ensembl 0.3 -28.3 -28286 0.2 SPI1 piR-61514-025 LINC01699 CACNA1E IER5
GH01J181220 Enhancer 0.2 Ensembl 0.4 -15.5 -15486 0.6 LINC01699 piR-61514-025 CACNA1E IER5
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC01699 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for LINC01699 Gene

Latest Assembly
chr1:181,236,387-181,238,604
(GRCh38/hg38)
Size:
2,218 bases
Orientation:
Plus strand

Previous Assembly
chr1:181,205,524-181,207,740
(GRCh37/hg19 by Entrez Gene)
Size:
2,217 bases
Orientation:
Plus strand

chr1:181,205,524-181,207,740
(GRCh37/hg19 by Ensembl)
Size:
2,217 bases
Orientation:
Plus strand

Genomic View for LINC01699 Gene

Genes around LINC01699 on UCSC Golden Path with GeneCards custom track
LINC01699 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Cytogenetic band:
LINC01699 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC01699 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC01699 Gene

Proteins for LINC01699 Gene

Post-translational modifications for LINC01699 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC01699 Gene

Domains & Families for LINC01699 Gene

Gene Families for LINC01699 Gene

genes like me logo Genes that share domains with LINC01699: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC01699 Gene

Function for LINC01699 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC01699 Gene

Localization for LINC01699 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC01699 Gene

Pathways & Interactions for LINC01699 Gene

PathCards logo

SuperPathways for LINC01699 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LINC01699 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LINC01699 Gene

Drugs & Compounds for LINC01699 Gene

No Compound Related Data Available

Transcripts for LINC01699 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for LINC01699 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS0000195690_9606 lncRNA 259 5

RefSeq: NR_046249,

Ensembl: ENST00000319701 (view in UCSC) ,

LncBook: HSALNT0018339,

LNCipedia: LINC01699:3,

NONCODE: NONHSAT008292.2,

URS0001BEF395_9606 lncRNA 259 1

LncBook: HSALNT0018339,

LINC01699 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for LINC01699 Gene

1 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC01699 Gene

No ASD Table

Relevant External Links for LINC01699 Gene

GeneLoc Exon Structure for
LINC01699

Expression for LINC01699 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for LINC01699

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC01699 Gene

Orthologs for LINC01699 Gene

Evolution for LINC01699 Gene

ENSEMBL:
Gene Tree for LINC01699 (if available)
TreeFam:
Gene Tree for LINC01699 (if available)

No data available for Orthologs for LINC01699 Gene

Paralogs for LINC01699 Gene

No data available for Paralogs for LINC01699 Gene

Variants for LINC01699 Gene

dbSNP identifiers (rs#s) for variants without ClinVar clinical significance for LINC01699 Gene

All consequence types are included: molecular consequences (e.g. missense, synonymous), and location-based (e.g. intron, upstream).

Structural Variations from Database of Genomic Variants (DGV) for LINC01699 Gene

Variant ID Type Subtype PubMed ID
esv26294 CNV gain 19812545

Additional Variant Information for LINC01699 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC01699

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for LINC01699 Gene

Disorders for LINC01699 Gene

MalaCards: The human disease database

(1) MalaCards diseases for LINC01699 Gene - From: COP

Disorder Aliases PubMed IDs
thrombocytopenia-absent radius syndrome
  • tar
- elite association - COSMIC cancer census association via MalaCards

Additional Disease Information for LINC01699

genes like me logo Genes that share disorders with LINC01699: view

No data available for UniProtKB/Swiss-Prot and Genatlas for LINC01699 Gene

Publications for LINC01699 Gene

  1. Identification of six novel genes by experimental validation of GeneMachine predicted genes. (PMID: 11891061) Makalowska I … Carpten JD (Gene 2002) 3

Products for LINC01699 Gene

Sources for LINC01699 Gene