LINC01688 Gene (RNA Gene)

Long Intergenic Non-Protein Coding RNA 1688

GC01P182713
GIFtS:
8
See more...

Aliases for LINC01688 Gene

Subcategory (RNA class) for LINC01688 Gene

lncRNA

Number of RNA Genes sources:

3 / 17

Aliases for LINC01688 Gene

  • Long Intergenic Non-Protein Coding RNA 1688 2 3 5
  • LINC01688 5 165
  • NONHSAG003671.2 91
  • HSALNG0008936 164

External Ids for LINC01688 Gene

Summaries for LINC01688 Gene

GeneCards Summary for LINC01688 Gene

LINC01688 (Long Intergenic Non-Protein Coding RNA 1688) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LINC01688 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LINC01688 Gene

Genomics for LINC01688 Gene

GeneHancer (GH) Regulatory Elements Pubs

Download GeneHancer 2017 data
Promoters and enhancers for LINC01688 Gene
GeneHancer (GH) Identifier GH Type GH
Score		 GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites		 Gene Targets
GH01J182713 Enhancer 0.4 FANTOM5 600.7 +1.2 1161 0.1 NR2F1 ZNF335 VEZF1 LINC01688 RGS8 RGS16 DHX9 ENSG00000271269 lnc-NPL-4
GH01J182716 Enhancer 0.6 Ensembl 11 +4.6 4631 1 PRDM1 RUNX3 CEBPB ATF2 EP300 GATA3 JUND ATF4 CEBPG ATF3 RGS8 LINC01688 RGS16 ENSG00000271269 lnc-NPL-4
GH01J182702 Enhancer 0.6 Ensembl 11.3 -8.9 -8868 1.6 FOXA1 ZSCAN5C FOXA2 CUX1 WT1 GATA3 RCOR1 FEZF1 PRDM6 CHD2 LINC01688 RGS16 lnc-RGS8-2 RGS8
GH01J182686 Enhancer 0.8 Ensembl ENCODE 7.4 -24.7 -24684 2.1 PRDM10 ZHX2 FOXA1 CTBP1 ZNF217 FOSL1 GATA3 DPF2 RCOR1 ZNF687 RGS16 LINC01688 lnc-RGS8-1 lnc-RGS8-2 RGS8
GH01J182764 Enhancer 0.7 Ensembl 6.7 +52.2 52232 0.6 ZNF341 ZNF561 SCRT2 ARNT ZBTB44 ZXDB OSR2 ZNF580 SCRT1 OVOL3 NPL RGS16 LINC01688 RGS8
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC01688 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for LINC01688 Gene

Genomic Locations for LINC01688 Gene
chr1:182,712,669-182,714,700
(GRCh38/hg38)
Size:
2,032 bases
Orientation:
Plus strand
chr1:182,681,997-182,683,679
(GRCh37/hg19)
Size:
1,683 bases
Orientation:
Plus strand

Genomic View for LINC01688 Gene

Genes around LINC01688 on UCSC Golden Path with GeneCards custom track
LINC01688 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
LINC01688 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC01688 Gene
GeneLoc Logo Genomic Neighborhood • Exon Structure • Gene Density

RefSeq DNA sequence for LINC01688 Gene

Proteins for LINC01688 Gene

Products:

  1. Antibody
  2. Protein
  3. Assay

Post-translational modifications for LINC01688 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC01688 Gene

Domains & Families for LINC01688 Gene

Gene Families for LINC01688 Gene

HGNC:
genes like me logo Genes that share domains with LINC01688: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC01688 Gene

Function for LINC01688 Gene

Products:

  1. Animal Model
  2. CRISPR
  3. miRNA
  4. Inhibitory RNA
  5. Clone
  6. Cell Line

Phenotypes From GWAS Catalog for LINC01688 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC01688 Gene

Localization for LINC01688 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC01688 Gene

Pathways & Interactions for LINC01688 Gene

PathCards logo

SuperPathways for LINC01688 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LINC01688 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LINC01688 Gene

Drugs & Compounds for LINC01688 Gene

Products:

  1. Drug
No Compound Related Data Available

Transcripts for LINC01688 Gene

Products:

  1. CRISPR
  2. miRNA
  3. Inhibitory RNA
  4. Clone

Non-coding RNA (ncRNA) Transcripts from RNAcentral for LINC01688 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS00003632A4_9606 lncRNA 259 2

Ensembl: ENST00000435492 (view in UCSC) ,

LNCipedia: LINC01688:10,

URS00008BE6D9_9606 lncRNA 575 3

LncBook: HSALNT0018483,

LNCipedia: LINC01688:9,

NONCODE: NONHSAT008328.2,

URS00008BF8C8_9606 lncRNA 473 3

LncBook: HSALNT0018480,

LNCipedia: LINC01688:7,

NONCODE: NONHSAT008326.2,

URS00008BCF70_9606 lncRNA 443 3

LncBook: HSALNT0018481,

LNCipedia: LINC01688:8,

NONCODE: NONHSAT008327.2,

URS00009B66A6_9606 lncRNA 416 2

LncBook: HSALNT0018482,

NONCODE: NONHSAT150145.1,

LINC01688 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for LINC01688 Gene

2 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC01688 Gene

No ASD Table

Relevant External Links for LINC01688 Gene

GeneLoc Exon Structure for
LINC01688

Expression for LINC01688 Gene

Products:

  1. Primer
No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC01688 Gene

Orthologs for LINC01688 Gene

Evolution for LINC01688 Gene

ENSEMBL:
Gene Tree for LINC01688 (if available)
TreeFam:
Gene Tree for LINC01688 (if available)

No data available for Orthologs for LINC01688 Gene

Paralogs for LINC01688 Gene

No data available for Paralogs for LINC01688 Gene

Variants for LINC01688 Gene

Additional dbSNP identifiers (rs#s) for LINC01688 Gene

Additional Variant Information for LINC01688 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC01688

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for LINC01688 Gene

Disorders for LINC01688 Gene

Additional Disease Information for LINC01688

ATLAS of Genetics and Cytogenetics in Oncology and Haematology

No disorders were found for LINC01688 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC01688 Gene

Publications for LINC01688 Gene

  1. Identification of 9 novel transcripts and two RGSL genes within the hereditary prostate cancer region (HPC1) at 1q25. (PMID: 12801632) Silva AP … Camargo AA (Gene 2003) 3

No data available for Mastermind for LINC01688 Gene

Products for LINC01688 Gene

Sources for LINC01688 Gene