LINC01686 Gene (RNA Gene)

Long Intergenic Non-Protein Coding RNA 1686

GC01P182615
GIFtS:
9
See more...

Aliases for LINC01686 Gene

Subcategory (RNA class) for LINC01686 Gene

lncRNA

Number of RNA Genes sources:

2 / 17

Aliases for LINC01686 Gene

  • Long Intergenic Non-Protein Coding RNA 1686 2 3 5
  • LINC01686 2 5 165
  • NONHSAG003667.2 91

External Ids for LINC01686 Gene

Summaries for LINC01686 Gene

GeneCards Summary for LINC01686 Gene

LINC01686 (Long Intergenic Non-Protein Coding RNA 1686) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LINC01686 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LINC01686 Gene

Genomics for LINC01686 Gene

GeneHancer (GH) Regulatory Elements Pubs

Download GeneHancer 2017 data
Promoters and enhancers for LINC01686 Gene
GeneHancer (GH) Identifier GH Type GH
Score		 GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites		 Gene Targets
GH01J182613 Promoter/Enhancer 2.4 EPDnew Ensembl ENCODE CraniofacialAtlas dbSUPER 600.7 +0.5 492 3.4 RNF2 SP1 ATF7 PRDM10 ZNF629 POLR2A ZNF692 BACH1 JUND LARP7 LINC01686 HMGN1P4 DHX9 LAMC1-AS1 RGS16 lnc-RGS8-6 RGS8
GH01J182388 Promoter/Enhancer 2.2 EPDnew Ensembl ENCODE CraniofacialAtlas dbSUPER 11 -224.4 -224361 5.2 ZNF221 SP1 HNRNPL REST IKZF1 NFKBIZ ZNF692 POLR2A ZNF7 ZNF174 GLUL HSALNG0008912 DHX9 HMGN1P4 LAMC1-AS1 LINC01686 RNASEL LAMC2 TEDDM1 EIF1P3
GH01J182617 Enhancer 1.3 ENCODE CraniofacialAtlas dbSUPER 0.7 +3.1 3054 1.2 PRDM10 ZNF629 ZNF692 PRDM1 ZIC2 POLR2A PATZ1 TCF12 IKZF2 ZNF501 SMG7-AS1 DHX9 LINC01686 RGS16 lnc-RGS8-6 RGS8
GH01J182611 Enhancer 1.1 ENCODE CraniofacialAtlas dbSUPER 0.7 -3.2 -3213 1.1 SP1 PRDM10 RELA ZIC2 TCF12 ZNF341 ZNF561 SCRT2 MNT EED LINC01686 RGS16 RGS8
GH01J182632 Enhancer 1.2 Ensembl ENCODE dbSUPER 0.4 +18.5 18461 3.6 CREB1 PRDM10 ZNF629 ZNF692 TARDBP FOXA1 ZIC2 PATZ1 NR2C1 IKZF2 RGS16 RGS8 lnc-RGS8-6 LINC01686
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC01686 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for LINC01686 Gene

Genomic Locations for LINC01686 Gene
chr1:182,615,140-182,616,629
(GRCh38/hg38)
Size:
1,490 bases
Orientation:
Plus strand
chr1:182,584,275-182,585,764
(GRCh37/hg19)
Size:
1,490 bases
Orientation:
Plus strand

Genomic View for LINC01686 Gene

Genes around LINC01686 on UCSC Golden Path with GeneCards custom track
LINC01686 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
LINC01686 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC01686 Gene
GeneLoc Logo Genomic Neighborhood • Exon Structure • Gene Density

RefSeq DNA sequence for LINC01686 Gene

Proteins for LINC01686 Gene

Products:

  1. Antibody
  2. Protein
  3. Assay

Post-translational modifications for LINC01686 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC01686 Gene

Domains & Families for LINC01686 Gene

Gene Families for LINC01686 Gene

HGNC:
genes like me logo Genes that share domains with LINC01686: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC01686 Gene

Function for LINC01686 Gene

Products:

  1. Animal Model
  2. CRISPR
  3. miRNA
  4. Inhibitory RNA
  5. Clone
  6. Cell Line

Phenotypes From GWAS Catalog for LINC01686 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC01686 Gene

Localization for LINC01686 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC01686 Gene

Pathways & Interactions for LINC01686 Gene

PathCards logo

SuperPathways for LINC01686 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LINC01686 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LINC01686 Gene

Drugs & Compounds for LINC01686 Gene

Products:

  1. Drug
No Compound Related Data Available

Transcripts for LINC01686 Gene

Products:

  1. CRISPR
  2. miRNA
  3. Inhibitory RNA
  4. Clone

Non-coding RNA (ncRNA) Transcripts from RNAcentral for LINC01686 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS000075DC66_9606 lncRNA 1490 2

HGNC: 27643,

RefSeq: NR_036490,

URS0000558FE6_9606 lncRNA 1376 2

Ensembl: ENST00000566297 (view in UCSC) ,

LNCipedia: LINC01686:5,

URS00008B8278_9606 lncRNA 1490 2

LNCipedia: LINC01686:4,

NONCODE: NONHSAT008321.2,

LINC01686 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for LINC01686 Gene

2 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC01686 Gene

No ASD Table

Relevant External Links for LINC01686 Gene

GeneLoc Exon Structure for
LINC01686

Expression for LINC01686 Gene

Products:

  1. Primer

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for LINC01686

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC01686 Gene

Orthologs for LINC01686 Gene

Evolution for LINC01686 Gene

ENSEMBL:
Gene Tree for LINC01686 (if available)
TreeFam:
Gene Tree for LINC01686 (if available)

No data available for Orthologs for LINC01686 Gene

Paralogs for LINC01686 Gene

No data available for Paralogs for LINC01686 Gene

Variants for LINC01686 Gene

Additional dbSNP identifiers (rs#s) for LINC01686 Gene

Structural Variations from Database of Genomic Variants (DGV) for LINC01686 Gene

Variant ID Type Subtype PubMed ID
esv1010175 CNV deletion 20482838
nsv548358 CNV gain 21841781
nsv825531 CNV loss 20364138

Additional Variant Information for LINC01686 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC01686

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for LINC01686 Gene

Disorders for LINC01686 Gene

Additional Disease Information for LINC01686

ATLAS of Genetics and Cytogenetics in Oncology and Haematology
Open Targets Platform

No disorders were found for LINC01686 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC01686 Gene

Publications for LINC01686 Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3

No data available for Mastermind for LINC01686 Gene

Products for LINC01686 Gene

Sources for LINC01686 Gene