Aliases for LINC01686 Gene

Data sources for LINC01686 Gene:

Subcategory (RNA class) for LINC01686 Gene

lncRNA

Aliases for LINC01686 Gene

External Ids for LINC01686 Gene

Summaries for LINC01686 Gene

GeneCards Summary for LINC01686 Gene

LINC01686 (Long Intergenic Non-Protein Coding RNA 1686) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LINC01686 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LINC01686 Gene

Genomics for LINC01686 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for LINC01686 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH01J182613 Promoter/Enhancer 2.4 EPDnew Ensembl ENCODE CraniofacialAtlas dbSUPER 250.7 +0.5 493 3.4 ZSCAN16 BCL11A ZBTB10 SP1 FEZF1 ETS1 POLR2A ZEB1 ELF1 ZIC2 LINC01686 DHX9 LAMC1-AS1 SMG7-AS1 RGS16 HSALNG0008927 lnc-RGS8-6 RGS8
GH01J182617 Enhancer 1.3 ENCODE CraniofacialAtlas dbSUPER 0.7 +3.1 3055 1.2 ZSCAN16 ZBTB10 FEZF1 ZIC2 ZNF610 CEBPB ZNF623 ZNF639 MAX IRF4 SMG7-AS1 DHX9 LINC01686 RGS16 lnc-RGS8-6 RGS8
GH01J182611 Enhancer 1.1 ENCODE CraniofacialAtlas dbSUPER 0.7 -3.2 -3212 1.1 SP1 BCL11A ZIC2 IRF4 ZNF341 EBF1 MAX CBFB BHLHE40 BATF HSALNG0008928 HSALNG0008927 LINC01686 RGS16 RGS8
GH01J182632 Enhancer 1.2 Ensembl ENCODE dbSUPER 0.4 +18.5 18462 3.6 ZBTB10 FEZF1 ZNF217 NR2C1 ELF1 ZIC2 ZNF513 MBD2 CUX1 HES1 RGS16 RGS8 lnc-RGS8-6 LINC01686
GH01J182622 Enhancer 0.9 ENCODE dbSUPER 0.4 +8.5 8487 2.7 SP1 BCL11A IRF4 EBF1 SMARCA5 CBFB SPI1 STAT5A NFATC1 IKZF1 NPL LINC01686 RGS16 lnc-RGS8-6 RGS8
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC01686 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for LINC01686 Gene

Latest Assembly
chr1:182,615,139-182,616,629
(GRCh38/hg38)
Size:
1,491 bases
Orientation:
Plus strand

Previous Assembly
chr1:182,584,275-182,585,764
(GRCh37/hg19 by Entrez Gene)
Size:
1,490 bases
Orientation:
Plus strand

chr1:182,584,389-182,585,764
(GRCh37/hg19 by Ensembl)
Size:
1,376 bases
Orientation:
Plus strand

Genomic View for LINC01686 Gene

Genes around LINC01686 on UCSC Golden Path with GeneCards custom track
LINC01686 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Cytogenetic band:
LINC01686 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC01686 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC01686 Gene

Proteins for LINC01686 Gene

Post-translational modifications for LINC01686 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC01686 Gene

Domains & Families for LINC01686 Gene

Gene Families for LINC01686 Gene

genes like me logo Genes that share domains with LINC01686: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC01686 Gene

Function for LINC01686 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC01686 Gene

Localization for LINC01686 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC01686 Gene

Pathways & Interactions for LINC01686 Gene

PathCards logo

SuperPathways for LINC01686 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LINC01686 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LINC01686 Gene

Drugs & Compounds for LINC01686 Gene

No Compound Related Data Available

Transcripts for LINC01686 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for LINC01686 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS0000558FE6_9606 lncRNA 1377 2

Ensembl: ENST00000566297 (view in UCSC) ,

LNCipedia: LINC01686:5,

URS000075DC66_9606 lncRNA 1490 1

RefSeq: NR_036490,

URS00008B8278_9606 lncRNA 1490 2

LNCipedia: LINC01686:4,

NONCODE: NONHSAT008321.2,

LINC01686 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for LINC01686 Gene

2 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC01686 Gene

No ASD Table

Relevant External Links for LINC01686 Gene

GeneLoc Exon Structure for
LINC01686

Expression for LINC01686 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for LINC01686

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC01686 Gene

Orthologs for LINC01686 Gene

Evolution for LINC01686 Gene

ENSEMBL:
Gene Tree for LINC01686 (if available)
TreeFam:
Gene Tree for LINC01686 (if available)

No data available for Orthologs for LINC01686 Gene

Paralogs for LINC01686 Gene

No data available for Paralogs for LINC01686 Gene

Variants for LINC01686 Gene

dbSNP identifiers (rs#s) for variants without ClinVar clinical significance for LINC01686 Gene

All consequence types are included: molecular consequences (e.g. missense, synonymous), and location-based (e.g. intron, upstream).

Structural Variations from Database of Genomic Variants (DGV) for LINC01686 Gene

Variant ID Type Subtype PubMed ID
esv1010175 CNV deletion 20482838
nsv548358 CNV gain 21841781
nsv825531 CNV loss 20364138

Additional Variant Information for LINC01686 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC01686

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for LINC01686 Gene

Disorders for LINC01686 Gene

Additional Disease Information for LINC01686

No disorders were found for LINC01686 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC01686 Gene

Publications for LINC01686 Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3

No data available for Mastermind for LINC01686 Gene

Products for LINC01686 Gene

Sources for LINC01686 Gene