Aliases for LINC01681 Gene

Subcategory (RNA class) for LINC01681 Gene

lncRNA

Number of RNA Genes sources:

3 / 17

Aliases for LINC01681 Gene

  • Long Intergenic Non-Protein Coding RNA 1681 2 3 5
  • LINC01681 2 5 165
  • NONHSAG003427.2 91
  • Lnc-METTL11B-3 165
  • HSALNG0008365 164
  • HSALNG0008367 164

External Ids for LINC01681 Gene

Summaries for LINC01681 Gene

GeneCards Summary for LINC01681 Gene

LINC01681 (Long Intergenic Non-Protein Coding RNA 1681) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LINC01681 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LINC01681 Gene

Genomics for LINC01681 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for LINC01681 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH01J170175 Enhancer 0.2 Ensembl 600.7 +1.8 1836 0.2 LINC01681 METTL11B lnc-KIFAP3-4 ISCUP1 GORAB
GH01J170214 Enhancer 0.8 Ensembl ENCODE 0.3 +40.5 40536 0.4 IKZF2 TRIM22 YBX1 DPF2 RELB RUNX3 GATAD2B ARNT NBN IKZF1 ISCUP1 lnc-KIFAP3-4 piR-50129-010 LINC01681 METTL11B GORAB
GH01J170162 Enhancer 0.5 Ensembl ENCODE 0.4 -10.9 -10924 1.1 BHLHE40 ZNF664 METTL18 KIFAP3 LINC01681 MIR3119-1 METTL11B GORAB
GH01J170167 Enhancer 0.4 Ensembl 0.4 -6.2 -6164 0.2 ZNF24 ZNF189 IRF9 HLF LINC01681 MIR3119-1 METTL11B GORAB
GH01J170221 Enhancer 0.6 Ensembl ENCODE 0.3 +47.4 47436 0.6 RELB IKZF1 TBX21 MTA2 ZNF687 ISCUP1 lnc-KIFAP3-4 piR-50129-010 LINC01681 METTL11B GORAB
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC01681 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for LINC01681 Gene

Genomic Locations for LINC01681 Gene
chr1:170,173,865-170,403,651
(GRCh38/hg38)
Size:
229,787 bases
Orientation:
Plus strand
chr1:170,143,544-170,210,428
(GRCh37/hg19)
Size:
66,885 bases
Orientation:
Plus strand

Genomic View for LINC01681 Gene

Genes around LINC01681 on UCSC Golden Path with GeneCards custom track
LINC01681 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
LINC01681 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC01681 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC01681 Gene

Proteins for LINC01681 Gene

Post-translational modifications for LINC01681 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC01681 Gene

Domains & Families for LINC01681 Gene

Gene Families for LINC01681 Gene

genes like me logo Genes that share domains with LINC01681: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC01681 Gene

Function for LINC01681 Gene

Phenotypes From GWAS Catalog for LINC01681 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC01681 Gene

Localization for LINC01681 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC01681 Gene

Pathways & Interactions for LINC01681 Gene

PathCards logo

SuperPathways for LINC01681 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LINC01681 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LINC01681 Gene

Drugs & Compounds for LINC01681 Gene

No Compound Related Data Available

Transcripts for LINC01681 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for LINC01681 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS00001AD2DE_9606 lncRNA 760 4

Ensembl: ENST00000439184 (view in UCSC) ,

LncBook: HSALNT0017309,

LNCipedia: LINC01681:4,

NONCODE: NONHSAT007491.2,

URS0000BC448B_9606 lncRNA 967 2

HGNC: 52468,

RefSeq: NR_146891,

URS0000EEDC64_9606 lncRNA 1363 1

Ensembl: ENST00000671647 (view in UCSC) ,

URS0000EEB8D0_9606 lncRNA 1129 1

Ensembl: ENST00000654909 (view in UCSC) ,

URS0000EF4D2B_9606 lncRNA 1028 1

Ensembl: ENST00000661719 (view in UCSC) ,

LINC01681 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for LINC01681 Gene

3 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC01681 Gene

No ASD Table

Relevant External Links for LINC01681 Gene

GeneLoc Exon Structure for
LINC01681

Expression for LINC01681 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC01681 Gene

Orthologs for LINC01681 Gene

Evolution for LINC01681 Gene

ENSEMBL:
Gene Tree for LINC01681 (if available)
TreeFam:
Gene Tree for LINC01681 (if available)

No data available for Orthologs for LINC01681 Gene

Paralogs for LINC01681 Gene

No data available for Paralogs for LINC01681 Gene

Variants for LINC01681 Gene

Additional dbSNP identifiers (rs#s) for LINC01681 Gene

Additional Variant Information for LINC01681 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC01681

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for LINC01681 Gene

Disorders for LINC01681 Gene

Additional Disease Information for LINC01681

No disorders were found for LINC01681 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC01681 Gene

Publications for LINC01681 Gene

  1. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3

No data available for Mastermind for LINC01681 Gene

Products for LINC01681 Gene

Sources for LINC01681 Gene