Aliases for LINC01679 Gene

Subcategory (RNA class) for LINC01679 Gene

lncRNA

Number of RNA Genes sources:

3 / 17

Aliases for LINC01679 Gene

  • Long Intergenic Non-Protein Coding RNA 1679 2 3 5
  • LINC01679 2 5 165
  • NONHSAG032979.2 91
  • TCONS_00029157 3
  • HSALNG0133409 164

External Ids for LINC01679 Gene

Summaries for LINC01679 Gene

GeneCards Summary for LINC01679 Gene

LINC01679 (Long Intergenic Non-Protein Coding RNA 1679) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LINC01679 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LINC01679 Gene

Genomics for LINC01679 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for LINC01679 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH21J043360 Promoter/Enhancer 1.8 EPDnew Ensembl ENCODE CraniofacialAtlas dbSUPER 609.6 +0.4 383 3.1 PKNOX1 SP1 POLR2A HDAC1 SOX6 CTCF CEBPB CTBP1 RUNX3 HES1 LINC01679 ENSG00000225637 SIK1 FRGCA CRYAA
GH21J043364 Promoter/Enhancer 1.2 Ensembl ENCODE dbSUPER 5.3 -3.1 -3096 1.6 HNRNPL TFE3 ZIC2 RXRB ESR1 ZNF423 NFIC ZFHX2 SAP130 POLR2A SIK1 LINC01679 ENSG00000225637 lnc-SIK1-2 CRYAA
GH21J043372 Enhancer 1.1 FANTOM5 Ensembl ENCODE dbSUPER 5.2 -10.9 -10917 1.3 ZIC2 RUNX3 BRCA1 CEBPB CHD2 RCOR1 GTF2F1 MAX SMC3 TBP SIK1 ENSG00000225637 LINC01679 lnc-SIK1-2 CRYAA
GH21J043367 Promoter 0.9 Ensembl 5.1 -5.2 -5154 2.4 ARHGAP35 ZSCAN4 ZNF747 ZNF239 MNT HES1 ZNF512B ZKSCAN1 CTBP1 TSC22D4 TRPM2 PWP2 SIK1 ENSG00000233754 TRAPPC10 WDR4 ENSG00000184441 RRP1B LINC01679 ENSG00000225637
GH21J043379 Enhancer 1.6 FANTOM5 Ensembl ENCODE CraniofacialAtlas dbSUPER 0.4 -19.4 -19353 6 SP1 HNRNPL CREB1 BACH1 RELA ZIC2 ZSCAN4 POLR2A TCF12 IKZF2 SIK1 PKNOX1 lnc-SIK1-2 LINC01679 CRYAA
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC01679 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for LINC01679 Gene

Genomic Locations for LINC01679 Gene
chr21:43,357,550-43,362,447
(GRCh38/hg38)
Size:
4,898 bases
Orientation:
Minus strand
chr21:44,778,027-44,782,229
(GRCh37/hg19)
Size:
4,203 bases
Orientation:
Minus strand

Genomic View for LINC01679 Gene

Genes around LINC01679 on UCSC Golden Path with GeneCards custom track
LINC01679 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
LINC01679 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC01679 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC01679 Gene

Proteins for LINC01679 Gene

Post-translational modifications for LINC01679 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC01679 Gene

Domains & Families for LINC01679 Gene

Gene Families for LINC01679 Gene

genes like me logo Genes that share domains with LINC01679: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC01679 Gene

Function for LINC01679 Gene

Phenotypes From GWAS Catalog for LINC01679 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC01679 Gene

Localization for LINC01679 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC01679 Gene

Pathways & Interactions for LINC01679 Gene

PathCards logo

SuperPathways for LINC01679 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LINC01679 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LINC01679 Gene

Drugs & Compounds for LINC01679 Gene

No Compound Related Data Available

Transcripts for LINC01679 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for LINC01679 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS00003A901F_9606 lncRNA 2798 4

Ensembl: ENST00000442815 (view in UCSC) ,

LncBook: HSALNT0274228,

LNCipedia: LINC01679:9,

NONCODE: NONHSAT082399.2,

URS00008E39FD_9606 lncRNA 2890 2

HGNC: 52469,

RefSeq: NR_131902,

URS00008B270B_9606 lncRNA 2900 3

LncBook: HSALNT0274226,

LNCipedia: LINC01679:8,

NONCODE: NONHSAT082397.2,

URS00008C1A31_9606 lncRNA 318 3

LncBook: HSALNT0274230,

LNCipedia: LINC01679:12,

NONCODE: NONHSAT082400.2,

URS00009B4A20_9606 lncRNA 2798 2

LncBook: HSALNT0274229,

NONCODE: NONHSAT191554.1,

LINC01679 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for LINC01679 Gene

3 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC01679 Gene

No ASD Table

Relevant External Links for LINC01679 Gene

GeneLoc Exon Structure for
LINC01679

Expression for LINC01679 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for LINC01679

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC01679 Gene

Orthologs for LINC01679 Gene

Evolution for LINC01679 Gene

ENSEMBL:
Gene Tree for LINC01679 (if available)
TreeFam:
Gene Tree for LINC01679 (if available)

No data available for Orthologs for LINC01679 Gene

Paralogs for LINC01679 Gene

No data available for Paralogs for LINC01679 Gene

Variants for LINC01679 Gene

Additional dbSNP identifiers (rs#s) for LINC01679 Gene

Additional Variant Information for LINC01679 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC01679

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for LINC01679 Gene

Disorders for LINC01679 Gene

No disorders were found for LINC01679 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC01679 Gene

Publications for LINC01679 Gene

  1. Integrative Analysis of Normal Long Intergenic Non-Coding RNAs in Prostate Cancer. (PMID: 25933431) Bawa P … Srinivasan S (PloS one 2015) 3
  2. A genome-wide association study of the metabolic syndrome in Indian Asian men. (PMID: 20694148) Zabaneh D … Balding DJ (PloS one 2010) 3
  3. Normalization and subtraction: two approaches to facilitate gene discovery. (PMID: 8889548) Bonaldo MF … Soares MB (Genome research 1996) 3

No data available for Mastermind for LINC01679 Gene

Products for LINC01679 Gene

Sources for LINC01679 Gene