Aliases for LINC01679 Gene

Subcategory (RNA class) for LINC01679 Gene

lncRNA

Quality Score for this RNA gene is

15

Aliases for LINC01679 Gene

  • Long Intergenic Non-Protein Coding RNA 1679 2 3 5
  • LINC01679 2 170
  • TCONS_00029157 3
  • NONHSAG032979 94
  • HSALNG0133409 169

External Ids for LINC01679 Gene

Summaries for LINC01679 Gene

GeneCards Summary for LINC01679 Gene

LINC01679 (Long Intergenic Non-Protein Coding RNA 1679) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LINC01679 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LINC01679 Gene

Genomics for LINC01679 Gene

GeneHancer (GH) Regulatory Elements for LINC01679 Gene

Promoters and enhancers for LINC01679 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH21J043360 Promoter/Enhancer 1.4 Ensembl ENCODE CraniofacialAtlas dbSUPER 759.5 +0.6 624 3.1 L3MBTL2 MNT TEAD4 POLR2A CBFA2T2 BACH1 MLLT1 PKNOX1 SP1 HDAC1 LINC01679 ENSG00000225637 SIK1 FRGCA lnc-CRYAA-1
GH21J043364 Promoter/Enhancer 1.2 Ensembl ENCODE dbSUPER 5.3 -2.9 -2855 1.6 ELF3 TFE3 ZIC2 RXRB SAP130 STAT1 POLR2A ZNF423 NFIC ZFHX2 SIK1 LINC01679 ENSG00000225637 lnc-SIK1-2
GH21J043372 Enhancer 1.1 FANTOM5 Ensembl ENCODE dbSUPER 5.2 -10.7 -10676 1.3 ZIC2 BRCA1 CEBPB CHD2 RCOR1 MAX RUNX3 SMC3 USF2 EBF1 SIK1 ENSG00000225637 LINC01679 lnc-SIK1-2
GH21J043367 Promoter 0.9 Ensembl 5.3 -4.9 -4913 2.4 TRIM22 MNT MTA3 ZSCAN21 HDGF CTBP1 ZSCAN4 HES1 ZNF239 ZNF747 SIK1 WDR4 ENSG00000233754 PWP2 U2AF1 TRAPPC10 ENSG00000184441 RRP1B TRPM2 LINC01679
GH21J043359 Enhancer 0.5 dbSUPER 0.6 +2.5 2548 0.7 ZSCAN4 EGR1 ZNF662 ZFHX2 YY2 RRP1B WDR4 ENSG00000225637 PDE9A LINC01679 lnc-CRYAA-1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC01679 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LINC01679 Gene

Genomic Locations for LINC01679 Gene
chr21:43,357,550-43,362,688
(GRCh38/hg38)
Size:
5,139 bases
Orientation:
Minus strand
chr21:44,778,027-44,782,229
(GRCh37/hg19)
Size:
4,203 bases
Orientation:
Minus strand

Genomic View for LINC01679 Gene

Genes around LINC01679 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LINC01679 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC01679 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC01679 Gene

Proteins for LINC01679 Gene

Post-translational modifications for LINC01679 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC01679 Gene

Domains & Families for LINC01679 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC01679 Gene

Function for LINC01679 Gene

Phenotypes From GWAS Catalog for LINC01679 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC01679 Gene

Localization for LINC01679 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC01679 Gene

Pathways & Interactions for LINC01679 Gene

PathCards logo

SuperPathways for LINC01679 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LINC01679 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LINC01679 Gene

Drugs & Compounds for LINC01679 Gene

No Compound Related Data Available

Transcripts for LINC01679 Gene

mRNA/cDNA for LINC01679 Gene

(1) REFSEQ mRNAs :
(3) Additional mRNA sequences :
(1) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
(8) RNACentral transcripts :
(5) NONCODE transcripts :
(4) LncBook transcripts :
(6) LNCipedia transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC01679 Gene

No ASD Table

Relevant External Links for LINC01679 Gene

GeneLoc Exon Structure for
LINC01679
ECgene alternative splicing isoforms for
LINC01679

Expression for LINC01679 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC01679 Gene

Orthologs for LINC01679 Gene

Evolution for LINC01679 Gene

ENSEMBL:
Gene Tree for LINC01679 (if available)
TreeFam:
Gene Tree for LINC01679 (if available)

No data available for Orthologs for LINC01679 Gene

Paralogs for LINC01679 Gene

No data available for Paralogs for LINC01679 Gene

Variants for LINC01679 Gene

Sequence variations from dbSNP and Humsavar for LINC01679 Gene

SNP ID Clin Chr 21 pos Variation AA Info Type
rs1000116739 -- 43,357,778(-) C/T downstream_transcript_variant
rs1000293780 -- 43,361,485(-) C/T non_coding_transcript_variant
rs1000367859 -- 43,362,013(-) C/T non_coding_transcript_variant
rs1000472 -- 43,357,998(-) C/T downstream_transcript_variant
rs1000473 -- 43,357,894(-) C/T downstream_transcript_variant

Additional Variant Information for LINC01679 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC01679

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for LINC01679 Gene

Disorders for LINC01679 Gene

Additional Disease Information for LINC01679

No disorders were found for LINC01679 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC01679 Gene

Publications for LINC01679 Gene

  1. Integrative Analysis of Normal Long Intergenic Non-Coding RNAs in Prostate Cancer. (PMID: 25933431) Bawa P … Srinivasan S (PloS one 2015) 3 56
  2. A genome-wide association study of the metabolic syndrome in Indian Asian men. (PMID: 20694148) Zabaneh D … Balding DJ (PloS one 2010) 3 56
  3. Normalization and subtraction: two approaches to facilitate gene discovery. (PMID: 8889548) Bonaldo MF … Soares MB (Genome research 1996) 3 56

No data available for External Links for LINC01679 Gene

Products for LINC01679 Gene

Sources for LINC01679 Gene