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Aliases for LINC01679 Gene

Subcategory (RNA class) for LINC01679 Gene

non-coding RNA

Quality Score for this RNA gene is

13

Aliases for LINC01679 Gene

  • Long Intergenic Non-Protein Coding RNA 1679 2 3 5
  • TCONS_00029157 3

External Ids for LINC01679 Gene

Summaries for LINC01679 Gene

GeneCards Summary for LINC01679 Gene

LINC01679 (Long Intergenic Non-Protein Coding RNA 1679) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for LINC01679 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LINC01679 Gene

Genomics for LINC01679 Gene

GeneHancer (GH) Regulatory Elements for LINC01679 Gene

Promoters and enhancers for LINC01679 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH21J043360 Promoter/Enhancer 1.4 Ensembl ENCODE dbSUPER 609.6 +0.6 624 3.1 CBFA2T2 MLLT1 BACH1 POLR2A PKNOX1 SP1 HDAC1 SOX6 CTBP1 RNF2 LINC01679 ENSG00000225637 SIK1 FRGCA LINC00322
GH21J043370 Enhancer 1.2 Ensembl ENCODE dbSUPER 4.8 -7.6 -7613 3 MTA3 ZSCAN21 CREM HDGF IKZF1 CREB1 IKZF2 ZSCAN4 CTBP1 PKNOX1 SIK1 WDR4 ENSG00000233754 TRPM2 PWP2 U2AF1 TRAPPC10 RRP1B ENSG00000184441 ENSG00000225637
GH21J043372 Enhancer 1 FANTOM5 ENCODE dbSUPER 5.2 -10.6 -10644 1.2 ZIC2 BRCA1 CEBPB CHD2 RCOR1 MAX RUNX3 SMC3 USF2 EBF1 SIK1 ENSG00000225637 LINC01679 PIR50990
GH21J043364 Enhancer 0.9 ENCODE dbSUPER 5.3 -2.9 -2855 1.6 ELF3 TFE3 ZIC2 RXRB SAP130 POLR2A STAT1 ZNF423 NFIC ZFHX2 SIK1 LINC01679 ENSG00000225637 PIR50990
GH21J043785 Enhancer 0.8 dbSUPER 5.2 -423.7 -423700 2.4 ZNF148 NKRF CEBPG ZSCAN21 ZBTB7A ZBTB33 DPF2 CEBPA ZNF239 ZNF792 CSTB U2AF1 WDR4 RRP1B PWP2 RRP1 LINC01679 TMEM97P1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC01679 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LINC01679 Gene

Genomic Locations for LINC01679 Gene
chr21:43,358,055-43,362,688
(GRCh38/hg38)
Size:
4,634 bases
Orientation:
Minus strand
chr21:44,778,027-44,782,229
(GRCh37/hg19)
Size:
4,203 bases
Orientation:
Minus strand

Genomic View for LINC01679 Gene

Genes around LINC01679 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LINC01679 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC01679 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC01679 Gene

Proteins for LINC01679 Gene

Post-translational modifications for LINC01679 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC01679 Gene

Domains & Families for LINC01679 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LINC01679 Gene

Function for LINC01679 Gene

Phenotypes From GWAS Catalog for LINC01679 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC01679 Gene

Localization for LINC01679 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC01679 Gene

Pathways & Interactions for LINC01679 Gene

PathCards logo

SuperPathways for LINC01679 Gene

No Data Available

Interacting Proteins for LINC01679 Gene

Gene Ontology (GO) - Biological Process for LINC01679 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LINC01679 Gene

Drugs & Compounds for LINC01679 Gene

No Compound Related Data Available

Transcripts for LINC01679 Gene

mRNA/cDNA for LINC01679 Gene

(3) Additional mRNA sequences :
(1) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
(2) RNA Central transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC01679 Gene

No ASD Table

Relevant External Links for LINC01679 Gene

GeneLoc Exon Structure for
LINC01679
ECgene alternative splicing isoforms for
LINC01679

Expression for LINC01679 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC01679 Gene

Orthologs for LINC01679 Gene

Evolution for LINC01679 Gene

ENSEMBL:
Gene Tree for LINC01679 (if available)
TreeFam:
Gene Tree for LINC01679 (if available)

No data available for Orthologs for LINC01679 Gene

Paralogs for LINC01679 Gene

No data available for Paralogs for LINC01679 Gene

Variants for LINC01679 Gene

Sequence variations from dbSNP and Humsavar for LINC01679 Gene

SNP ID Clin Chr 21 pos Variation AA Info Type
rs1000116739 -- 43,357,778(-) C/T downstream_transcript_variant
rs1000293780 -- 43,361,485(-) C/T non_coding_transcript_variant
rs1000367859 -- 43,362,013(-) C/T non_coding_transcript_variant
rs1000472 -- 43,357,998(-) C/T downstream_transcript_variant
rs1000473 -- 43,357,894(-) C/T downstream_transcript_variant

Additional Variant Information for LINC01679 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC01679

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for LINC01679 Gene

Disorders for LINC01679 Gene

Additional Disease Information for LINC01679

No disorders were found for LINC01679 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC01679 Gene

Publications for LINC01679 Gene

  1. Integrative Analysis of Normal Long Intergenic Non-Coding RNAs in Prostate Cancer. (PMID: 25933431) Bawa P … Srinivasan S (PloS one 2015) 3 58
  2. A genome-wide association study of the metabolic syndrome in Indian Asian men. (PMID: 20694148) Zabaneh D … Balding DJ (PloS one 2010) 3 58
  3. Normalization and subtraction: two approaches to facilitate gene discovery. (PMID: 8889548) Bonaldo MF … Soares MB (Genome research 1996) 3 58

No data available for External Links for LINC01679 Gene

Products for LINC01679 Gene

Sources for LINC01679 Gene

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