Aliases for LINC01677 Gene

Data sources for LINC01677 Gene:

Subcategory (RNA class) for LINC01677 Gene

lncRNA

Aliases for LINC01677 Gene

External Ids for LINC01677 Gene

Summaries for LINC01677 Gene

GeneCards Summary for LINC01677 Gene

LINC01677 (Long Intergenic Non-Protein Coding RNA 1677) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LINC01677 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LINC01677 Gene

Genomics for LINC01677 Gene

Genomic Locations for LINC01677 Gene

Latest Assembly
chr1:105,927,283-106,028,297
(GRCh38/hg38)
Size:
101,015 bases
Orientation:
Minus strand

Previous Assembly
chr1:106,470,246-106,570,875
(GRCh37/hg19 by Entrez Gene)
Size:
100,630 bases
Orientation:
Minus strand

chr1:106,470,246-106,565,834
(GRCh37/hg19 by Ensembl)
Size:
95,589 bases
Orientation:
Minus strand

Genomic View for LINC01677 Gene

Genes around LINC01677 on UCSC Golden Path with GeneCards custom track
LINC01677 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Cytogenetic band:
LINC01677 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC01677 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC01677 Gene

No data available for GeneHancer (GH) Regulatory Elements for LINC01677 Gene

Proteins for LINC01677 Gene

Post-translational modifications for LINC01677 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC01677 Gene

Domains & Families for LINC01677 Gene

Gene Families for LINC01677 Gene

genes like me logo Genes that share domains with LINC01677: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC01677 Gene

Function for LINC01677 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC01677 Gene

Localization for LINC01677 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC01677 Gene

Pathways & Interactions for LINC01677 Gene

PathCards logo

SuperPathways for LINC01677 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LINC01677 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LINC01677 Gene

Drugs & Compounds for LINC01677 Gene

No Compound Related Data Available

Transcripts for LINC01677 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for LINC01677 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS0000498A0D_9606 lncRNA 459 4

Ensembl: ENST00000429080 (view in UCSC) ,

LncBook: HSALNT0011882,

LNCipedia: LINC01677:10,

NONCODE: NONHSAT004932.2,

URS00009C6132_9606 lncRNA 1338 3

Ensembl: ENST00000635342 (view in UCSC) ,

LncBook: HSALNT0011884,

LNCipedia: LINC01677:9,

URS00009C60CB_9606 lncRNA 966 3

Ensembl: ENST00000635713 (view in UCSC) ,

LncBook: HSALNT0011883,

LNCipedia: LINC01677:11,

URS00000347B1_9606 lncRNA 557 3

Ensembl: ENST00000446693 (view in UCSC) ,

LNCipedia: LINC01677:13,

NONCODE: NONHSAT004931.2,

URS00009C5FD6_9606 lncRNA 2362 2

Ensembl: ENST00000635636 (view in UCSC) ,

LNCipedia: LINC01677:8,

LINC01677 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for LINC01677 Gene

2 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC01677 Gene

No ASD Table

Relevant External Links for LINC01677 Gene

GeneLoc Exon Structure for
LINC01677

Expression for LINC01677 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC01677 Gene

Orthologs for LINC01677 Gene

Evolution for LINC01677 Gene

ENSEMBL:
Gene Tree for LINC01677 (if available)
TreeFam:
Gene Tree for LINC01677 (if available)

No data available for Orthologs for LINC01677 Gene

Paralogs for LINC01677 Gene

No data available for Paralogs for LINC01677 Gene

Variants for LINC01677 Gene

dbSNP identifiers (rs#s) for variants without ClinVar clinical significance for LINC01677 Gene

All consequence types are included: molecular consequences (e.g. missense, synonymous), and location-based (e.g. intron, upstream).

Additional Variant Information for LINC01677 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC01677

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for LINC01677 Gene

Disorders for LINC01677 Gene

Additional Disease Information for LINC01677

No disorders were found for LINC01677 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC01677 Gene

Publications for LINC01677 Gene

  1. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3

No data available for Mastermind for LINC01677 Gene

Products for LINC01677 Gene

Sources for LINC01677 Gene