Aliases for LINC01675 Gene

Subcategory (RNA class) for LINC01675 Gene

lncRNA

Number of RNA Genes sources:

3 / 17

Aliases for LINC01675 Gene

  • Long Intergenic Non-Protein Coding RNA 1675 2 3 5
  • LINC01675 2 5 165
  • NONHSAG003355.2 91
  • HSALNG0008185 164

External Ids for LINC01675 Gene

Summaries for LINC01675 Gene

GeneCards Summary for LINC01675 Gene

LINC01675 (Long Intergenic Non-Protein Coding RNA 1675) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LINC01675 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LINC01675 Gene

Genomics for LINC01675 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for LINC01675 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH01J166489 Promoter/Enhancer 1.6 EPDnew Ensembl ENCODE 600.7 +0.4 358 2.5 ARHGAP35 ATF7 LEF1 IKZF1 JUND DDX20 MTA2 PHF21A RELA PKNOX1 LINC01675 ENSG00000215835 UCK2 ALDH9A1 FMO7P lnc-POGK-5 FAM78B POGK
GH01J166488 Enhancer 0.5 ENCODE 600.7 +1.7 1741 0.1 NFE2 ZNF316 NFIC MAFF NR4A1 EMSY LINC01675 FMO7P lnc-POGK-5 FAM78B POGK
GH01J166528 Enhancer 0.3 Ensembl 0.3 -38.2 -38194 0.2 CEBPB HSALNG0008187 LINC01675 POGK FAM78B
GH01J166527 Enhancer 0.2 Ensembl 0.3 -37.3 -37294 0.8 HSALNG0008187 LINC01675 POGK FAM78B
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC01675 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for LINC01675 Gene

Genomic Locations for LINC01675 Gene
chr1:166,474,879-166,490,307
(GRCh38/hg38)
Size:
15,429 bases
Orientation:
Minus strand
chr1:166,445,009-166,459,276
(GRCh37/hg19)
Size:
14,268 bases
Orientation:
Minus strand

Genomic View for LINC01675 Gene

Genes around LINC01675 on UCSC Golden Path with GeneCards custom track
LINC01675 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
LINC01675 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC01675 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC01675 Gene

Proteins for LINC01675 Gene

Post-translational modifications for LINC01675 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC01675 Gene

Domains & Families for LINC01675 Gene

Gene Families for LINC01675 Gene

genes like me logo Genes that share domains with LINC01675: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC01675 Gene

Function for LINC01675 Gene

Phenotypes From GWAS Catalog for LINC01675 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC01675 Gene

Localization for LINC01675 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC01675 Gene

Pathways & Interactions for LINC01675 Gene

PathCards logo

SuperPathways for LINC01675 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LINC01675 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LINC01675 Gene

Drugs & Compounds for LINC01675 Gene

No Compound Related Data Available

Transcripts for LINC01675 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for LINC01675 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS0000219EA2_9606 lncRNA 701 4

HGNC: 52463,

RefSeq: NR_146890,

LNCipedia: LINC01675:3,

NONCODE: NONHSAT007362.2,

URS0000EEE393_9606 lncRNA 1651 1

Ensembl: ENST00000662326 (view in UCSC) ,

URS0000EEEF5B_9606 lncRNA 1033 1

Ensembl: ENST00000426519 (view in UCSC) ,

URS00009C4BC5_9606 lncRNA 701 2

LncBook: HSALNT0016960,

NONCODE: NONHSAT152487.1,

LINC01675 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for LINC01675 Gene

1 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC01675 Gene

No ASD Table

Relevant External Links for LINC01675 Gene

GeneLoc Exon Structure for
LINC01675

Expression for LINC01675 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC01675 Gene

Orthologs for LINC01675 Gene

Evolution for LINC01675 Gene

ENSEMBL:
Gene Tree for LINC01675 (if available)
TreeFam:
Gene Tree for LINC01675 (if available)

No data available for Orthologs for LINC01675 Gene

Paralogs for LINC01675 Gene

No data available for Paralogs for LINC01675 Gene

Variants for LINC01675 Gene

Additional dbSNP identifiers (rs#s) for LINC01675 Gene

Additional Variant Information for LINC01675 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC01675

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for LINC01675 Gene

Disorders for LINC01675 Gene

Additional Disease Information for LINC01675

No disorders were found for LINC01675 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC01675 Gene

Publications for LINC01675 Gene

No publications were found for LINC01675 Gene.

No data available for Mastermind for LINC01675 Gene

Products for LINC01675 Gene

Sources for LINC01675 Gene