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Aliases for LINC01671 Gene

Subcategory (RNA class) for LINC01671 Gene

non-coding RNA

Quality Score for this RNA gene is

13

Aliases for LINC01671 Gene

  • Long Intergenic Non-Protein Coding RNA 1671 2 3 5

External Ids for LINC01671 Gene

Summaries for LINC01671 Gene

GeneCards Summary for LINC01671 Gene

LINC01671 (Long Intergenic Non-Protein Coding RNA 1671) is an RNA Gene, and is affiliated with the non-coding RNA class. Diseases associated with LINC01671 include Breast Cancer.

Additional gene information for LINC01671 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LINC01671 Gene

Genomics for LINC01671 Gene

GeneHancer (GH) Regulatory Elements for LINC01671 Gene

Promoters and enhancers for LINC01671 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH21J042614 Promoter/Enhancer 1.4 Ensembl ENCODE 600.7 +0.1 87 1.3 MTA3 ELF3 CEBPG GTF2F1 CDC5L MCM2 SP1 MLLT1 IKZF1 CREB1 LINC01671 PRDM15 WDR4 ENSG00000227698 SIK1 PDE9A ENSG00000235023 ENSG00000235772 U2AF1 ENSG00000233754
GH21J042616 Promoter/Enhancer 1.3 Ensembl ENCODE 600.7 -1.4 -1406 0.6 MLLT1 CDC5L HDGF CREB1 YBX1 ZNF544 ZSCAN4 CTBP1 MTA2 ZNF311 LINC01671 PRDM15 WDR4 ENSG00000227698 SIK1 ENSG00000235023 PDE9A ENSG00000235772 PKNOX1 FRGCA
GH21J042590 Enhancer 1.4 VISTA Ensembl ENCODE 0.3 +22.5 22514 3.6 CTCF SP1 RAD21 RXRA REST ZSCAN4 POLR2A ZNF148 MNT ZNF10 ENSG00000235772 SLC37A1 WDR4 PRDM15 NDUFV3 LOC101928212 LINC01671
GH21J042624 Enhancer 0.9 Ensembl ENCODE 0.4 -9.7 -9706 1.6 ELF3 SP1 HNF1A CEBPA GATAD2A FOXA2 JUND ZNF662 YY1 TFDP1 ENSG00000235023 PDE9A WDR4 ENSG00000235772 PRDM15 LINC01671
GH21J042644 Enhancer 0.9 Ensembl ENCODE 0.3 -29.7 -29706 1.2 CBFA2T2 CREB1 ZNF600 PKNOX1 ATF7 ZNF629 EP300 MGA CTBP1 FOXK2 ENSG00000235023 SLC37A1 LINC01671
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC01671 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LINC01671 Gene

Genomic Locations for LINC01671 Gene
chr21:42,599,280-42,615,095
(GRCh38/hg38)
Size:
15,816 bases
Orientation:
Minus strand
chr21:44,019,390-44,035,168
(GRCh37/hg19)
Size:
15,779 bases
Orientation:
Minus strand

Genomic View for LINC01671 Gene

Genes around LINC01671 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LINC01671 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC01671 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC01671 Gene

Proteins for LINC01671 Gene

Post-translational modifications for LINC01671 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC01671 Gene

Domains & Families for LINC01671 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LINC01671 Gene

Function for LINC01671 Gene

Phenotypes From GWAS Catalog for LINC01671 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC01671 Gene

Localization for LINC01671 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC01671 Gene

Pathways & Interactions for LINC01671 Gene

PathCards logo

SuperPathways for LINC01671 Gene

No Data Available

Interacting Proteins for LINC01671 Gene

Gene Ontology (GO) - Biological Process for LINC01671 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LINC01671 Gene

Drugs & Compounds for LINC01671 Gene

No Compound Related Data Available

Transcripts for LINC01671 Gene

mRNA/cDNA for LINC01671 Gene

(2) Additional mRNA sequences :
(1) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
(2) RNA Central transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC01671 Gene

No ASD Table

Relevant External Links for LINC01671 Gene

GeneLoc Exon Structure for
LINC01671
ECgene alternative splicing isoforms for
LINC01671

Expression for LINC01671 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC01671 Gene

Orthologs for LINC01671 Gene

Evolution for LINC01671 Gene

ENSEMBL:
Gene Tree for LINC01671 (if available)
TreeFam:
Gene Tree for LINC01671 (if available)

No data available for Orthologs for LINC01671 Gene

Paralogs for LINC01671 Gene

No data available for Paralogs for LINC01671 Gene

Variants for LINC01671 Gene

Sequence variations from dbSNP and Humsavar for LINC01671 Gene

SNP ID Clin Chr 21 pos Variation AA Info Type
rs1000193417 -- 42,612,544(-) A/G/T intron_variant
rs1000269245 -- 42,612,342(-) C/T intron_variant
rs1000455999 -- 42,611,203(-) T/G intron_variant
rs1000529300 -- 42,610,884(-) A/G intron_variant
rs1000553284 -- 42,601,019(-) C/G intron_variant

Additional Variant Information for LINC01671 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC01671

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for LINC01671 Gene

Disorders for LINC01671 Gene

MalaCards: The human disease database

(1) MalaCards diseases for LINC01671 Gene - From: LncRNADisease

Disorder Aliases PubMed IDs
breast cancer
  • breast tumor
- elite association - COSMIC cancer census association via MalaCards

Additional Disease Information for LINC01671

genes like me logo Genes that share disorders with LINC01671: view

No data available for UniProtKB/Swiss-Prot and Genatlas for LINC01671 Gene

Publications for LINC01671 Gene

  1. Identification of differential expression lncRNAs in gastric cancer using transcriptome sequencing and bioinformatics analyses. (PMID: 29693709) Wang Y … Zhang J (Molecular medicine reports 2018) 2 3 58
  2. Primate-specific oestrogen-responsive long non-coding RNAs regulate proliferation and viability of human breast cancer cells. (PMID: 28003470) Lin CY … Lipovich L (Open biology 2016) 2 3 58
  3. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3 58

Products for LINC01671 Gene

Sources for LINC01671 Gene

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