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Aliases for LINC01657 Gene

Subcategory (RNA class) for LINC01657 Gene

non-coding RNA

Quality Score for this RNA gene is

13

Aliases for LINC01657 Gene

  • Long Intergenic Non-Protein Coding RNA 1657 2 3 5

External Ids for LINC01657 Gene

Summaries for LINC01657 Gene

GeneCards Summary for LINC01657 Gene

LINC01657 (Long Intergenic Non-Protein Coding RNA 1657) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for LINC01657 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LINC01657 Gene

Genomics for LINC01657 Gene

GeneHancer (GH) Regulatory Elements for LINC01657 Gene

Promoters and enhancers for LINC01657 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH01J175861 Enhancer 1 Ensembl ENCODE dbSUPER 0.4 -13.1 -13142 6 SP1 ZNF24 ZNF140 USF1 GATA3 SIN3A POU5F1 ZNF133 LINC01657 TNR
GH01J175888 Enhancer 0.8 ENCODE dbSUPER 0.4 +10.8 10847 0.2 HDGF CTCF RAD21 SMARCA5 USF1 SMC3 NRF1 ZNF143 XRCC5 ZNF2 LINC01657 LINC02803
GH01J175839 Enhancer 1 ENCODE 0.3 -36.5 -36457 2.7 ZNF652 ELF3 CEBPG ZSCAN21 TRIM24 SP7 KLF14 PRDM1 MZF1 FOSL2 COP1 LINC01657 TNR
GH01J175873 Enhancer 0.4 Ensembl 0.7 -3.8 -3842 0.2 IKZF1 EBF1 LINC01657 TNR
GH01J175872 Enhancer 0.3 Ensembl 0.7 -4.4 -4443 0.2 POLR2A LINC01657 TNR
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC01657 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LINC01657 Gene

Genomic Locations for LINC01657 Gene
chr1:175,877,343-175,880,468
(GRCh38/hg38)
Size:
3,126 bases
Orientation:
Plus strand
chr1:175,846,479-175,849,604
(GRCh37/hg19)
Size:
3,126 bases
Orientation:
Plus strand

Genomic View for LINC01657 Gene

Genes around LINC01657 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LINC01657 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC01657 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC01657 Gene

Proteins for LINC01657 Gene

Post-translational modifications for LINC01657 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC01657 Gene

Domains & Families for LINC01657 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LINC01657 Gene

Function for LINC01657 Gene

Phenotypes From GWAS Catalog for LINC01657 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC01657 Gene

Localization for LINC01657 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC01657 Gene

Pathways & Interactions for LINC01657 Gene

PathCards logo

SuperPathways for LINC01657 Gene

No Data Available

Interacting Proteins for LINC01657 Gene

Gene Ontology (GO) - Biological Process for LINC01657 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LINC01657 Gene

Drugs & Compounds for LINC01657 Gene

No Compound Related Data Available

Transcripts for LINC01657 Gene

mRNA/cDNA for LINC01657 Gene

(1) Additional mRNA sequences :
(1) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
(2) RNA Central transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC01657 Gene

No ASD Table

Relevant External Links for LINC01657 Gene

GeneLoc Exon Structure for
LINC01657
ECgene alternative splicing isoforms for
LINC01657

Expression for LINC01657 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC01657 Gene

Orthologs for LINC01657 Gene

Evolution for LINC01657 Gene

ENSEMBL:
Gene Tree for LINC01657 (if available)
TreeFam:
Gene Tree for LINC01657 (if available)

No data available for Orthologs for LINC01657 Gene

Paralogs for LINC01657 Gene

No data available for Paralogs for LINC01657 Gene

Variants for LINC01657 Gene

Sequence variations from dbSNP and Humsavar for LINC01657 Gene

SNP ID Clin Chr 01 pos Variation AA Info Type
rs1000269774 -- 175,880,174(+) C/G intron_variant
rs1000791233 -- 175,876,019(+) G/A upstream_transcript_variant
rs1001545811 -- 175,878,962(+) C/A/T non_coding_transcript_variant
rs1002017734 -- 175,878,723(+) C/T intron_variant
rs1002783942 -- 175,877,098(+) C/T upstream_transcript_variant

Additional Variant Information for LINC01657 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC01657

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for LINC01657 Gene

Disorders for LINC01657 Gene

Additional Disease Information for LINC01657

No disorders were found for LINC01657 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC01657 Gene

Publications for LINC01657 Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3 58

No data available for External Links for LINC01657 Gene

Products for LINC01657 Gene

Sources for LINC01657 Gene

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