LINC01655 Gene (RNA Gene)

Long Intergenic Non-Protein Coding RNA 1655

GC01M221774
GIFtS:
10
See more...

Aliases for LINC01655 Gene

Data sources for LINC01655 Gene:

Subcategory (RNA class) for LINC01655 Gene

lncRNA

Aliases for LINC01655 Gene

External Ids for LINC01655 Gene

Previous GeneCards Identifiers for LINC01655 Gene

  • GC01M221828

Summaries for LINC01655 Gene

GeneCards Summary for LINC01655 Gene

LINC01655 (Long Intergenic Non-Protein Coding RNA 1655) is an RNA Gene, and is affiliated with the lncRNA class.

Rfam classification for LINC01655 Gene

Additional gene information for LINC01655 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for LINC01655 Gene

Genomics for LINC01655 Gene

GeneHancer (GH) Regulatory Elements Pubs

Download GeneHancer 2017 data
Promoters and enhancers for LINC01655 Gene
GeneHancer (GH) Identifier GH Type GH
Score		 GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites		 Gene Targets
GH01J221838 Promoter/Enhancer 1.6 EPDnew Ensembl ENCODE dbSUPER 250.7 +0.2 154 3.6 BCL11A NR2C1 DEK ZNF217 BRCA1 ZIC2 CEBPB GABPA ZNF639 MAX LINC01655 DUSP10 BROX RF00026-103 HHIPL2
GH01J221837 Promoter/Enhancer 1 FANTOM5 Ensembl ENCODE 0.7 +2.7 2712 0.8 IKZF1 ZNF687 RNF2 IKZF2 RUNX3 EZH2 ETV6 RF00026-103 RNU6-403P DUSP10 LINC01655 HHIPL2
GH01J221826 Enhancer 1.4 FANTOM5 Ensembl ENCODE dbSUPER 0.4 +11.2 11240 8.2 CEBPB ZNF395 GTF2E2 VEZF1 GABPA FOSL1 RAD21 HLTF USF2 JUND DUSP10 RNU6-403P LINC01655 HSALNG0010825 HHIPL2
GH01J221824 Enhancer 1.1 FANTOM5 Ensembl ENCODE dbSUPER 0.4 +16.3 16316 1.6 EBF1 FOSL1 BATF IKZF1 GATA2 CREB1 ZNF687 YY1 EED EZH2 DUSP10 HSALNG0010825 RNU6-403P LINC01655 HHIPL2
GH01J221834 Enhancer 0.8 Ensembl dbSUPER 0.4 +5.7 5716 0.8 CEBPA CEBPB FOXA2 RXRA ZBTB33 KAT2B JUND FOXA1 RAD21 CEBPG RNU6-403P LINC01655 HSALNG0010825 DUSP10 HHIPL2
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC01655 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for LINC01655 Gene

Latest Assembly
chr1:221,773,641-221,840,717
(GRCh38/hg38)
Size:
67,077 bases
Orientation:
Minus strand

Previous Assembly
chr1:222,001,008-222,014,008
(GRCh37/hg19 by Entrez Gene)
Size:
13,001 bases
Orientation:
Minus strand

chr1:222,001,008-222,014,008
(GRCh37/hg19 by Ensembl)
Size:
13,001 bases
Orientation:
Minus strand

Genomic View for LINC01655 Gene

Genes around LINC01655 on UCSC Golden Path with GeneCards custom track
LINC01655 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Cytogenetic band:
LINC01655 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC01655 Gene
GeneLoc Logo Genomic Neighborhood • Exon Structure • Gene Density

RefSeq DNA sequence for LINC01655 Gene

Proteins for LINC01655 Gene

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  1. Antibodies for research
  2. Protein products for research
  3. Assay products for research

Post-translational modifications for LINC01655 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC01655 Gene

Domains & Families for LINC01655 Gene

Gene Families for LINC01655 Gene

HGNC:
genes like me logo Genes that share domains with LINC01655: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC01655 Gene

Function for LINC01655 Gene

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  1. Animal Models for research
  2. CRISPR products for research
  3. miRNA products for research
  4. Inhibitory RNAs for research
  5. Clone products for research
  6. Cell Lines for research

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC01655 Gene

Localization for LINC01655 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC01655 Gene

Pathways & Interactions for LINC01655 Gene

PathCards logo

SuperPathways for LINC01655 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LINC01655 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LINC01655 Gene

Drugs & Compounds for LINC01655 Gene

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  1. Drug products for research
No Compound Related Data Available

Transcripts for LINC01655 Gene

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  3. Inhibitory RNAs for research
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Non-coding RNA (ncRNA) Transcripts from RNAcentral for LINC01655 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS0000204966_9606 lncRNA 427 4

RefSeq: NR_125989,

LncBook: HSALNT0022463,

LNCipedia: LINC01655:5,

NONCODE: NONHSAT009645.2,

URS0000EF069D_9606 lncRNA 705 1

Ensembl: ENST00000665303 (view in UCSC) ,

URS0000EEFE34_9606 lncRNA 469 1

Ensembl: ENST00000431729 (view in UCSC) ,

URS00008B9125_9606 lncRNA 427 3

LncBook: HSALNT0022465,

LNCipedia: LINC01655:4,

NONCODE: NONHSAT009647.2,

URS00009C5C66_9606 lncRNA 584 2

LncBook: HSALNT0022462,

NONCODE: NONHSAT152999.1,

LINC01655 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for LINC01655 Gene

1 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC01655 Gene

No ASD Table

Relevant External Links for LINC01655 Gene

GeneLoc Exon Structure for
LINC01655

Expression for LINC01655 Gene

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  1. Primer products for research

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for LINC01655

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC01655 Gene

Orthologs for LINC01655 Gene

Evolution for LINC01655 Gene

ENSEMBL:
Gene Tree for LINC01655 (if available)
TreeFam:
Gene Tree for LINC01655 (if available)

No data available for Orthologs for LINC01655 Gene

Paralogs for LINC01655 Gene

No data available for Paralogs for LINC01655 Gene

Variants for LINC01655 Gene

dbSNP identifiers (rs#s) for variants without ClinVar clinical significance for LINC01655 Gene

All consequence types are included: molecular consequences (e.g. missense, synonymous), and location-based (e.g. intron, upstream).

Additional Variant Information for LINC01655 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC01655

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for LINC01655 Gene

Disorders for LINC01655 Gene

Additional Disease Information for LINC01655

Atlas
ATLAS of Genetics and Cytogenetics in Oncology and Haematology

No disorders were found for LINC01655 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC01655 Gene

Publications for LINC01655 Gene

No publications were found for LINC01655 Gene.

ExternalLinks

View latest publications for LINC01655 gene in Mastermind

Products for LINC01655 Gene

Sources for LINC01655 Gene