LINC01655 Gene (RNA Gene)

Long Intergenic Non-Protein Coding RNA 1655

GC01M221828
GIFtS:
9
See more...

Aliases for LINC01655 Gene

Subcategory (RNA class) for LINC01655 Gene

lncRNA

Number of RNA Genes sources:

3 / 17

Aliases for LINC01655 Gene

  • Long Intergenic Non-Protein Coding RNA 1655 2 3 5
  • LINC01655 2 5 165
  • NONHSAG004370.2 91
  • HSALNG0010821 164
  • Lnc-DUSP10-10 165

External Ids for LINC01655 Gene

Summaries for LINC01655 Gene

GeneCards Summary for LINC01655 Gene

LINC01655 (Long Intergenic Non-Protein Coding RNA 1655) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LINC01655 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LINC01655 Gene

Genomics for LINC01655 Gene

GeneHancer (GH) Regulatory Elements Pubs

Download GeneHancer 2017 data
Promoters and enhancers for LINC01655 Gene
GeneHancer (GH) Identifier GH Type GH
Score		 GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites		 Gene Targets
GH01J221838 Promoter/Enhancer 1.6 EPDnew Ensembl ENCODE dbSUPER 600.7 +0.1 130 3.6 CREB1 ATF7 PRDM10 ZNF629 TFE3 BACH1 STAT3 ZNF143 RELA ZIC2 LINC01655 DUSP10 BROX RF00026-103 HHIPL2
GH01J221837 Promoter/Enhancer 1.1 FANTOM5 Ensembl ENCODE 0.7 +2.7 2712 0.8 RNF2 RUNX3 CHD1 ZNF687 EZH2 IKZF1 ETV6 IKZF2 RF00026-103 RNU6-403P DUSP10 LINC01655 HHIPL2
GH01J221826 Enhancer 1.4 FANTOM5 Ensembl ENCODE dbSUPER 0.4 +11.2 11240 8.2 ZNF512 JUND MTA2 MTA1 DPF2 ETV6 EP300 MNT GTF2E2 SP1 DUSP10 RNU6-403P LINC01655 HSALNG0010821 HHIPL2
GH01J221845 Enhancer 1.1 Ensembl ENCODE dbSUPER 0.4 -5.3 -5324 1.3 CREB1 ZNF629 JUND FOXA1 ZIC2 ZNF341 ATF7 SCRT2 RFX1 CEBPB DUSP10 LINC01655 piR-32559-032 HHIPL2
GH01J221824 Enhancer 1.1 FANTOM5 Ensembl ENCODE dbSUPER 0.4 +16.3 16316 1.6 CREB1 PKNOX1 RELA EED FOS FOSL1 IKZF1 FOSL2 BATF EBF1 DUSP10 RNU6-403P LINC01655 HSALNG0010821 HHIPL2
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC01655 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for LINC01655 Gene

Genomic Locations for LINC01655 Gene
chr1:221,791,089-221,840,717
(GRCh38/hg38)
Size:
49,629 bases
Orientation:
Minus strand
chr1:222,001,008-222,014,008
(GRCh37/hg19)
Size:
13,001 bases
Orientation:
Minus strand

Genomic View for LINC01655 Gene

Genes around LINC01655 on UCSC Golden Path with GeneCards custom track
LINC01655 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
LINC01655 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC01655 Gene
GeneLoc Logo Genomic Neighborhood • Exon Structure • Gene Density

RefSeq DNA sequence for LINC01655 Gene

Proteins for LINC01655 Gene

Products:

  1. Antibody
  2. Protein
  3. Assay

Post-translational modifications for LINC01655 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC01655 Gene

Domains & Families for LINC01655 Gene

Gene Families for LINC01655 Gene

HGNC:
genes like me logo Genes that share domains with LINC01655: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC01655 Gene

Function for LINC01655 Gene

Products:

  1. Animal Model
  2. CRISPR
  3. miRNA
  4. Inhibitory RNA
  5. Clone
  6. Cell Line

Phenotypes From GWAS Catalog for LINC01655 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC01655 Gene

Localization for LINC01655 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC01655 Gene

Pathways & Interactions for LINC01655 Gene

PathCards logo

SuperPathways for LINC01655 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LINC01655 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LINC01655 Gene

Drugs & Compounds for LINC01655 Gene

Products:

  1. Drug
No Compound Related Data Available

Transcripts for LINC01655 Gene

Products:

  1. CRISPR
  2. miRNA
  3. Inhibitory RNA
  4. Clone

Non-coding RNA (ncRNA) Transcripts from RNAcentral for LINC01655 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS0000204966_9606 lncRNA 423 5

HGNC: 52443,

RefSeq: NR_125989,

LncBook: HSALNT0022463,

LNCipedia: LINC01655:5,

NONCODE: NONHSAT009645.2,

URS0000EF069D_9606 lncRNA 705 1

Ensembl: ENST00000665303 (view in UCSC) ,

URS0000EEFE34_9606 lncRNA 469 1

Ensembl: ENST00000431729 (view in UCSC) ,

URS00008B9125_9606 lncRNA 427 3

LncBook: HSALNT0022465,

LNCipedia: LINC01655:4,

NONCODE: NONHSAT009647.2,

URS00009C5C66_9606 lncRNA 584 2

LncBook: HSALNT0022462,

NONCODE: NONHSAT152999.1,

LINC01655 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for LINC01655 Gene

1 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC01655 Gene

No ASD Table

Relevant External Links for LINC01655 Gene

GeneLoc Exon Structure for
LINC01655

Expression for LINC01655 Gene

Products:

  1. Primer

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for LINC01655

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC01655 Gene

Orthologs for LINC01655 Gene

Evolution for LINC01655 Gene

ENSEMBL:
Gene Tree for LINC01655 (if available)
TreeFam:
Gene Tree for LINC01655 (if available)

No data available for Orthologs for LINC01655 Gene

Paralogs for LINC01655 Gene

No data available for Paralogs for LINC01655 Gene

Variants for LINC01655 Gene

Additional dbSNP identifiers (rs#s) for LINC01655 Gene

Additional Variant Information for LINC01655 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC01655

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for LINC01655 Gene

Disorders for LINC01655 Gene

Additional Disease Information for LINC01655

ATLAS of Genetics and Cytogenetics in Oncology and Haematology

No disorders were found for LINC01655 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC01655 Gene

Publications for LINC01655 Gene

No publications were found for LINC01655 Gene.

ExternalLinks

View latest publications for LINC01655 gene in Mastermind

Products for LINC01655 Gene

Sources for LINC01655 Gene