Aliases for LINC01653 Gene

Subcategory (RNA class) for LINC01653 Gene

lncRNA

Number of RNA Genes sources:

3 / 17

Aliases for LINC01653 Gene

  • Long Intergenic Non-Protein Coding RNA 1653 2 3 5
  • LINC01653 2 5 165
  • NONHSAG004299.2 91
  • HSALNG0010587 164

External Ids for LINC01653 Gene

Summaries for LINC01653 Gene

GeneCards Summary for LINC01653 Gene

LINC01653 (Long Intergenic Non-Protein Coding RNA 1653) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LINC01653 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LINC01653 Gene

Genomics for LINC01653 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for LINC01653 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH01J218048 Enhancer 0.8 VISTA UCNEbase Ensembl 0.4 +6.2 6168 2.1 ZNF341 CTCF ENSG00000286775 LOC105372922 RNU1-141P LINC01653 RF00003-012 RRP15 SPATA17
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC01653 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for LINC01653 Gene

Genomic Locations for LINC01653 Gene
chr1:218,043,505-218,059,141
(GRCh38/hg38)
Size:
15,637 bases
Orientation:
Plus strand
chr1:218,216,847-218,232,482
(GRCh37/hg19)
Size:
15,636 bases
Orientation:
Plus strand

Genomic View for LINC01653 Gene

Genes around LINC01653 on UCSC Golden Path with GeneCards custom track
LINC01653 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
LINC01653 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC01653 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC01653 Gene

Proteins for LINC01653 Gene

Post-translational modifications for LINC01653 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC01653 Gene

Domains & Families for LINC01653 Gene

Gene Families for LINC01653 Gene

genes like me logo Genes that share domains with LINC01653: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC01653 Gene

Function for LINC01653 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC01653 Gene

Localization for LINC01653 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC01653 Gene

Pathways & Interactions for LINC01653 Gene

PathCards logo

SuperPathways for LINC01653 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LINC01653 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LINC01653 Gene

Drugs & Compounds for LINC01653 Gene

No Compound Related Data Available

Transcripts for LINC01653 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for LINC01653 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS00001A091C_9606 lncRNA 1728 4

Ensembl: ENST00000456026 (view in UCSC) ,

LncBook: HSALNT0021935,

LNCipedia: LINC01653:3,

NONCODE: NONHSAT009511.2,

URS000075C098_9606 lncRNA 1728 2

HGNC: 52441,

RefSeq: NR_110794,

URS00009C5E27_9606 lncRNA 1728 2

LncBook: HSALNT0021936,

NONCODE: NONHSAT150532.1,

LINC01653 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for LINC01653 Gene

1 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC01653 Gene

No ASD Table

Relevant External Links for LINC01653 Gene

GeneLoc Exon Structure for
LINC01653

Expression for LINC01653 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for LINC01653

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC01653 Gene

Orthologs for LINC01653 Gene

Evolution for LINC01653 Gene

ENSEMBL:
Gene Tree for LINC01653 (if available)
TreeFam:
Gene Tree for LINC01653 (if available)

No data available for Orthologs for LINC01653 Gene

Paralogs for LINC01653 Gene

No data available for Paralogs for LINC01653 Gene

Variants for LINC01653 Gene

Additional dbSNP identifiers (rs#s) for LINC01653 Gene

Structural Variations from Database of Genomic Variants (DGV) for LINC01653 Gene

Variant ID Type Subtype PubMed ID
nsv1005829 CNV gain 25217958
nsv832592 CNV gain 17160897

Additional Variant Information for LINC01653 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC01653

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for LINC01653 Gene

Disorders for LINC01653 Gene

No disorders were found for LINC01653 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC01653 Gene

Publications for LINC01653 Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3

No data available for Mastermind for LINC01653 Gene

Products for LINC01653 Gene

Sources for LINC01653 Gene