Aliases for LINC01649 Gene

Data sources for LINC01649 Gene:

Subcategory (RNA class) for LINC01649 Gene

lncRNA

Aliases for LINC01649 Gene

External Ids for LINC01649 Gene

Previous GeneCards Identifiers for LINC01649 Gene

  • GC01P115920

Summaries for LINC01649 Gene

GeneCards Summary for LINC01649 Gene

LINC01649 (Long Intergenic Non-Protein Coding RNA 1649) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LINC01649 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LINC01649 Gene

Genomics for LINC01649 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for LINC01649 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH01J115906 Enhancer 0.5 ENCODE 250.7 +1.9 1940 0.2 ZNF217 CTBP1 SMARCE1 DPF2 ZHX2 ZNF24 MTA1 RCOR1 CEBPG LINC01649 lnc-SLC22A15-4 NHLH2 SLC22A15
GH01J115924 Promoter/Enhancer 0.9 EPDnew Ensembl ENCODE 0.4 +19.8 19774 2.5 TAF1 NANOG POLR2A SLC22A15 CASQ2 IGSF3 HSALNG0006297 piR-50443-026 LINC01649 LOC101928977 NHLH2
GH01J115911 Enhancer 0.6 Ensembl 0.4 +6.6 6646 0.6 ZNF217 CTBP1 SMARCE1 RAD51 DPF2 MNT ZHX2 CREB1 FOS GTF2F1 SLC22A15 ENSG00000237993 CASQ2 lnc-SLC22A15-4 LINC01649 NHLH2
GH01J115929 Enhancer 0.5 Ensembl 0.3 +25.2 25246 1.8 JUND RCOR1 GATA2 POLR2A FOSL2 ZNF24 FOS CHD2 EP300 L13713-013 SLC22A15 ENSG00000237993 IGSF3 LINC01649 lnc-SLC22A15-3 LOC101928977 NHLH2
GH01J115877 Enhancer 0.5 Ensembl 0.3 -27.0 -26954 1.4 ZIC2 ZBTB48 ZNF664 TRIM28 ZNF660 PRDM10 ZBTB20 ZBTB44 SLC22A15 HNRNPA1P43 LINC01649 NHLH2
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC01649 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for LINC01649 Gene

Latest Assembly
chr1:115,904,855-115,932,045
(GRCh38/hg38)
Size:
27,191 bases
Orientation:
Plus strand

Previous Assembly
chr1:116,461,997-116,468,529
(GRCh37/hg19 by Entrez Gene)
Size:
6,533 bases
Orientation:
Plus strand

chr1:116,461,997-116,468,529
(GRCh37/hg19 by Ensembl)
Size:
6,533 bases
Orientation:
Plus strand

Genomic View for LINC01649 Gene

Genes around LINC01649 on UCSC Golden Path with GeneCards custom track
LINC01649 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Cytogenetic band:
LINC01649 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC01649 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC01649 Gene

Proteins for LINC01649 Gene

Post-translational modifications for LINC01649 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC01649 Gene

Domains & Families for LINC01649 Gene

Gene Families for LINC01649 Gene

genes like me logo Genes that share domains with LINC01649: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC01649 Gene

Function for LINC01649 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC01649 Gene

Localization for LINC01649 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC01649 Gene

Pathways & Interactions for LINC01649 Gene

PathCards logo

SuperPathways for LINC01649 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LINC01649 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LINC01649 Gene

Drugs & Compounds for LINC01649 Gene

No Compound Related Data Available

Transcripts for LINC01649 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for LINC01649 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS0000EF4E4E_9606 lncRNA 1840 1

Ensembl: ENST00000659738 (view in UCSC) ,

URS0000EEE07E_9606 lncRNA 1765 1

Ensembl: ENST00000671350 (view in UCSC) ,

URS0000EED249_9606 lncRNA 1761 1

Ensembl: ENST00000634255 (view in UCSC) ,

URS0000EF492C_9606 lncRNA 1732 1

Ensembl: ENST00000669586 (view in UCSC) ,

URS0000EEBA2A_9606 lncRNA 1658 1

Ensembl: ENST00000438885 (view in UCSC) ,

LINC01649 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for LINC01649 Gene

1 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC01649 Gene

No ASD Table

Relevant External Links for LINC01649 Gene

GeneLoc Exon Structure for
LINC01649

Expression for LINC01649 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for LINC01649

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC01649 Gene

Orthologs for LINC01649 Gene

Evolution for LINC01649 Gene

ENSEMBL:
Gene Tree for LINC01649 (if available)
TreeFam:
Gene Tree for LINC01649 (if available)

No data available for Orthologs for LINC01649 Gene

Paralogs for LINC01649 Gene

No data available for Paralogs for LINC01649 Gene

Variants for LINC01649 Gene

dbSNP identifiers (rs#s) for variants without ClinVar clinical significance for LINC01649 Gene

All consequence types are included: molecular consequences (e.g. missense, synonymous), and location-based (e.g. intron, upstream).

Additional Variant Information for LINC01649 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC01649

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for LINC01649 Gene

Disorders for LINC01649 Gene

Additional Disease Information for LINC01649

No disorders were found for LINC01649 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC01649 Gene

Publications for LINC01649 Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3

No data available for Mastermind for LINC01649 Gene

Products for LINC01649 Gene

Sources for LINC01649 Gene