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Aliases for LINC01648 Gene

Subcategory (RNA class) for LINC01648 Gene

non-coding RNA

Quality Score for this RNA gene is


Aliases for LINC01648 Gene

  • Long Intergenic Non-Protein Coding RNA 1648 2 3 5

External Ids for LINC01648 Gene

Summaries for LINC01648 Gene

GeneCards Summary for LINC01648 Gene

LINC01648 (Long Intergenic Non-Protein Coding RNA 1648) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for LINC01648 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LINC01648 Gene

Genomics for LINC01648 Gene

GeneHancer (GH) Regulatory Elements for LINC01648 Gene

Promoters and enhancers for LINC01648 Gene
GeneHancer (GH) Identifier GH Type GH
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH01I029972 Enhancer 1.2 FANTOM5 Ensembl ENCODE 0.2 +63.5 63450 2.5 PKNOX1 INSM2 SIN3A DNMT3B ZEB1 ZNF766 ZNF366 SCRT2 ZNF143 FOS LINC01648 ENSG00000270927
GH01I030083 Enhancer 1.1 Ensembl ENCODE 0.2 -47.1 -47124 3.5 RB1 KLF17 ZNF76 ZNF2 ZBTB40 RAD21 ZNF335 GLIS2 ARID2 ZNF366 SRSF4 PUM1 TMEM200B PIR34057 LINC01648
GH01I029983 Enhancer 0.7 Ensembl ENCODE 0.2 +52.2 52181 3.4 GATA3 PKNOX1 RXRA REST ZIC2 NR2F2 LINC01648 ENSG00000270927
GH01I029923 Enhancer 0.5 ENCODE 0.1 +113.3 113254 1.9 ZFP36 CTBP2 MNT ZNF623 ETS1 ENSG00000270927 LINC01648
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around LINC01648 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LINC01648 Gene

Genomic Locations for LINC01648 Gene
23,661 bases
Minus strand

Genomic View for LINC01648 Gene

Genes around LINC01648 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LINC01648 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC01648 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC01648 Gene

Proteins for LINC01648 Gene

Post-translational modifications for LINC01648 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC01648 Gene

Domains & Families for LINC01648 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LINC01648 Gene

Function for LINC01648 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC01648 Gene

Localization for LINC01648 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC01648 Gene

Pathways & Interactions for LINC01648 Gene

SuperPathways for LINC01648 Gene

No Data Available

Interacting Proteins for LINC01648 Gene

Gene Ontology (GO) - Biological Process for LINC01648 Gene


No data available for Pathways by source and SIGNOR curated interactions for LINC01648 Gene

Drugs & Compounds for LINC01648 Gene

No Compound Related Data Available

Transcripts for LINC01648 Gene

mRNA/cDNA for LINC01648 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC01648 Gene

No ASD Table

Relevant External Links for LINC01648 Gene

GeneLoc Exon Structure for
ECgene alternative splicing isoforms for

Expression for LINC01648 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC01648 Gene

Orthologs for LINC01648 Gene

Evolution for LINC01648 Gene

Gene Tree for LINC01648 (if available)
Gene Tree for LINC01648 (if available)

No data available for Orthologs for LINC01648 Gene

Paralogs for LINC01648 Gene

No data available for Paralogs for LINC01648 Gene

Variants for LINC01648 Gene

Sequence variations from dbSNP and Humsavar for LINC01648 Gene

SNP ID Clin Chr 01 pos Variation AA Info Type
rs1000168909 -- 30,016,056(-) G/A intron_variant
rs1000393439 -- 30,021,074(-) T/A intron_variant
rs1000450533 -- 30,015,734(-) T/C intron_variant
rs1000509280 -- 30,017,189(-) T/C intron_variant
rs1000551042 -- 30,031,051(-) G/C intron_variant

Additional Variant Information for LINC01648 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for LINC01648 Gene

Disorders for LINC01648 Gene

Additional Disease Information for LINC01648

No disorders were found for LINC01648 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC01648 Gene

Publications for LINC01648 Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3 58

Products for LINC01648 Gene

Sources for LINC01648 Gene

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