Aliases for LINC01647 Gene

Subcategory (RNA class) for LINC01647 Gene

lncRNA

Quality Score for this RNA gene is

15

Aliases for LINC01647 Gene

  • Long Intergenic Non-Protein Coding RNA 1647 2 3 5
  • LINC01647 2 170
  • NONHSAG000374 94
  • HSALNG0000883 169

External Ids for LINC01647 Gene

Summaries for LINC01647 Gene

GeneCards Summary for LINC01647 Gene

LINC01647 (Long Intergenic Non-Protein Coding RNA 1647) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LINC01647 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LINC01647 Gene

Genomics for LINC01647 Gene

GeneHancer (GH) Regulatory Elements for LINC01647 Gene

Promoters and enhancers for LINC01647 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH01J012018 Promoter/Enhancer 2 EPDnew Ensembl ENCODE CraniofacialAtlas 6.2 +410.2 410167 2.9 SP1 SREBF1 SMARCE1 POLR2A CEBPZ USF2 NR2F6 ATF1 FOS CREB1 MIIP piR-60051-001 UBIAD1 KIAA2013 TNFRSF8 SNORA59A RNU6-777P RPL23AP89 PLOD1 LINC01647
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC01647 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LINC01647 Gene

Genomic Locations for LINC01647 Gene
chr1:11,609,468-11,613,358
(GRCh38/hg38)
Size:
3,891 bases
Orientation:
Plus strand
chr1:11,669,588-11,673,412
(GRCh37/hg19)
Size:
3,825 bases
Orientation:
Plus strand

Genomic View for LINC01647 Gene

Genes around LINC01647 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LINC01647 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC01647 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC01647 Gene

Proteins for LINC01647 Gene

Post-translational modifications for LINC01647 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC01647 Gene

Domains & Families for LINC01647 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC01647 Gene

Function for LINC01647 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC01647 Gene

Localization for LINC01647 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC01647 Gene

Pathways & Interactions for LINC01647 Gene

PathCards logo

SuperPathways for LINC01647 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LINC01647 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LINC01647 Gene

Drugs & Compounds for LINC01647 Gene

No Compound Related Data Available

Transcripts for LINC01647 Gene

mRNA/cDNA for LINC01647 Gene

(1) REFSEQ mRNAs :
(1) Additional mRNA sequences :
(1) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
(5) RNACentral transcripts :
(3) NONCODE transcripts :
(3) LNCipedia transcripts :
(3) LncBook transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC01647 Gene

No ASD Table

Relevant External Links for LINC01647 Gene

GeneLoc Exon Structure for
LINC01647
ECgene alternative splicing isoforms for
LINC01647

Expression for LINC01647 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC01647 Gene

Orthologs for LINC01647 Gene

Evolution for LINC01647 Gene

ENSEMBL:
Gene Tree for LINC01647 (if available)
TreeFam:
Gene Tree for LINC01647 (if available)

No data available for Orthologs for LINC01647 Gene

Paralogs for LINC01647 Gene

No data available for Paralogs for LINC01647 Gene

Variants for LINC01647 Gene

Sequence variations from dbSNP and Humsavar for LINC01647 Gene

SNP ID Clin Chr 01 pos Variation AA Info Type
rs1000892160 -- 11,611,194(+) T/C intron_variant
rs1001131809 -- 11,610,907(+) T/C intron_variant
rs1002120354 -- 11,610,425(+) G/A intron_variant
rs1002463761 -- 11,608,322(+) C/T upstream_transcript_variant
rs1002793045 -- 11,608,793(+) G/A/T upstream_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for LINC01647 Gene

Variant ID Type Subtype PubMed ID
nsv832647 CNV loss 17160897

Additional Variant Information for LINC01647 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC01647

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for LINC01647 Gene

Disorders for LINC01647 Gene

Additional Disease Information for LINC01647

No disorders were found for LINC01647 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC01647 Gene

Publications for LINC01647 Gene

No publications were found for LINC01647 Gene.

No data available for External Links for LINC01647 Gene

Products for LINC01647 Gene

Sources for LINC01647 Gene