Aliases for LINC01630 Gene

Subcategory (RNA class) for LINC01630 Gene

lncRNA

Number of RNA Genes sources:

3 / 17

Aliases for LINC01630 Gene

  • Long Intergenic Non-Protein Coding RNA 1630 2 3 5
  • LINC01630 2 5 165
  • NONHSAG023874.2 91
  • NONHSAG023877.2 91
  • HSALNG0121579 164
  • LOC100287225 2

External Ids for LINC01630 Gene

Summaries for LINC01630 Gene

GeneCards Summary for LINC01630 Gene

LINC01630 (Long Intergenic Non-Protein Coding RNA 1630) is an RNA Gene, and is affiliated with the lncRNA class. Diseases associated with LINC01630 include Colorectal Cancer.

Additional gene information for LINC01630 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LINC01630 Gene

Genomics for LINC01630 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for LINC01630 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH18J051391 Promoter 0.4 EPDnew 600.3 +45.8 45774 0.1 RFX5 LINC01630 SS18L2P2 lnc-MEX3C-5 piR-38732-009 MEX3C DCC
GH18J051361 Enhancer 0.9 Ensembl ENCODE 6.6 +15.3 15268 1 GATAD2A SOX13 ETV6 RXRB SP1 GABPA CEBPA TCF7 NR2C2 MEF2D piR-38732-009 piR-49423-116 piR-53431-312 LINC01630 SS18L2P2 lnc-MEX3C-5 MEX3C DCC
GH18J051321 Enhancer 0.4 Ensembl ENCODE 5.9 -24.3 -24348 1.4 CTCF LINC01630 piR-51855-014 MEX3C
GH18J051360 Enhancer 0.4 Ensembl 5.9 +14.5 14452 0.2 ZNF140 ZC3H11A ZFP64 PRDM12 piR-38732-009 piR-49423-116 piR-53431-312 ELAC1 SMAD4 LINC01630 MEX3C DCC
GH18J051330 Enhancer 0.4 Ensembl 6.2 -15.5 -15548 1.4 SOX13 BCL6 SOX5 LINC01630 piR-51855-014 MEX3C
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC01630 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for LINC01630 Gene

Genomic Locations for LINC01630 Gene
chr18:51,346,249-51,643,939
(GRCh38/hg38)
Size:
297,691 bases
Orientation:
Plus strand
chr18:48,872,619-49,088,939
(GRCh37/hg19)
Size:
216,321 bases
Orientation:
Plus strand

Genomic View for LINC01630 Gene

Genes around LINC01630 on UCSC Golden Path with GeneCards custom track
LINC01630 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
LINC01630 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC01630 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC01630 Gene

Proteins for LINC01630 Gene

Post-translational modifications for LINC01630 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC01630 Gene

Domains & Families for LINC01630 Gene

Gene Families for LINC01630 Gene

genes like me logo Genes that share domains with LINC01630: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC01630 Gene

Function for LINC01630 Gene

Phenotypes From GWAS Catalog for LINC01630 Gene

genes like me logo Genes that share phenotypes with LINC01630: view

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC01630 Gene

Localization for LINC01630 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC01630 Gene

Pathways & Interactions for LINC01630 Gene

PathCards logo

SuperPathways for LINC01630 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LINC01630 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LINC01630 Gene

Drugs & Compounds for LINC01630 Gene

No Compound Related Data Available

Transcripts for LINC01630 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for LINC01630 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS000046ECC3_9606 lncRNA 1799 4

HGNC: 52295,

RefSeq: NR_040074,

LNCipedia: LINC01630:20,

NONCODE: NONHSAT059309.2,

URS00003A7082_9606 lncRNA 571 4

Ensembl: ENST00000583609 (view in UCSC) ,

LncBook: HSALNT0251303,

LNCipedia: LINC01630:19,

NONCODE: NONHSAT059308.2,

URS0000363265_9606 lncRNA 563 4

Ensembl: ENST00000580841 (view in UCSC) ,

LncBook: HSALNT0251302,

LNCipedia: LINC01630:18,

NONCODE: NONHSAT059307.2,

URS00004A9D12_9606 lncRNA 539 4

Ensembl: ENST00000582689 (view in UCSC) ,

LncBook: HSALNT0251295,

LNCipedia: LINC01630:13,

NONCODE: NONHSAT059305.2,

URS00009C5FFE_9606 lncRNA 4363 3

Ensembl: ENST00000635680 (view in UCSC) ,

LncBook: HSALNT0251299,

LNCipedia: LINC01630:16,

LINC01630 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for LINC01630 Gene

2 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC01630 Gene

No ASD Table

Relevant External Links for LINC01630 Gene

GeneLoc Exon Structure for
LINC01630

Expression for LINC01630 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for LINC01630

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC01630 Gene

Orthologs for LINC01630 Gene

Evolution for LINC01630 Gene

ENSEMBL:
Gene Tree for LINC01630 (if available)
TreeFam:
Gene Tree for LINC01630 (if available)

No data available for Orthologs for LINC01630 Gene

Paralogs for LINC01630 Gene

No data available for Paralogs for LINC01630 Gene

Variants for LINC01630 Gene

Additional dbSNP identifiers (rs#s) for LINC01630 Gene

Structural Variations from Database of Genomic Variants (DGV) for LINC01630 Gene

Variant ID Type Subtype PubMed ID
dgv1603n106 CNV deletion 24896259
dgv3357n100 CNV gain 25217958
esv2447754 CNV deletion 19546169
esv2554364 CNV deletion 19546169
esv2567489 CNV insertion 19546169
esv3574042 CNV gain 25503493
esv3574053 CNV gain 25503493
nsv1123179 CNV deletion 24896259
nsv2305 CNV insertion 18451855
nsv474237 CNV novel sequence insertion 20440878
nsv474614 CNV novel sequence insertion 20440878
nsv479298 CNV novel sequence insertion 20440878
nsv513498 CNV insertion 21212237
nsv576894 CNV gain 21841781
nsv833653 CNV gain 17160897

Additional Variant Information for LINC01630 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC01630

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for LINC01630 Gene

Disorders for LINC01630 Gene

MalaCards: The human disease database

(1) MalaCards diseases for LINC01630 Gene - From: LncRNADisease

Disorder Aliases PubMed IDs
colorectal cancer
  • crc
- elite association - COSMIC cancer census association via MalaCards
genes like me logo Genes that share disorders with LINC01630: view

No data available for UniProtKB/Swiss-Prot and Genatlas for LINC01630 Gene

Publications for LINC01630 Gene

  1. Misregulation of the dependence receptor DCC and its upstream lincRNA, LOC100287225, in colorectal cancer. (PMID: 26429648) Kazemzadeh M … Shokoohi B (Tumori 2017) 2 3
  2. Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population. (PMID: 23251661) Comuzzie AG … Butte NF (PloS one 2012) 3
  3. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3

Products for LINC01630 Gene

Sources for LINC01630 Gene