Aliases for LINC01628 Gene

Subcategory (RNA class) for LINC01628 Gene

lncRNA

Number of RNA Genes sources:

3 / 14

Aliases for LINC01628 Gene

  • Long Intergenic Non-Protein Coding RNA 1628 2 3 5
  • LINC01628 2 168
  • NONHSAG028030 92
  • HSALNG0015617 167

External Ids for LINC01628 Gene

Summaries for LINC01628 Gene

GeneCards Summary for LINC01628 Gene

LINC01628 (Long Intergenic Non-Protein Coding RNA 1628) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LINC01628 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LINC01628 Gene

Genomics for LINC01628 Gene

GeneHancer (GH) Regulatory Elements for LINC01628 Gene

Promoters and enhancers for LINC01628 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH02J066924 Enhancer 0.2 Ensembl 500.7 -1.6 -1601 0.2 LINC01628 LINC01799 lnc-ETAA1-16
GH02J066929 Enhancer 0.9 UCNEbase Ensembl ENCODE 0.4 -8.0 -8039 2.1 CEBPB KLF16 PKNOX1 SP1 ESR1 LINC01799 lnc-ETAA1-16 LINC01628
GH02J066925 Enhancer 0.3 Ensembl 0.7 -2.8 -2801 0.6 CEBPB EP300 LINC01829 LINC01628 lnc-ETAA1-16 LINC01799
GH02J066905 Enhancer 0.2 FANTOM5 0.4 +17.0 16965 0.1 LINC01799 LINC01628
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC01628 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LINC01628 Gene

Genomic Locations for LINC01628 Gene
chr2:66,921,509-66,922,500
(GRCh38/hg38)
Size:
992 bases
Orientation:
Minus strand
chr2:67,148,642-67,149,589
(GRCh37/hg19)
Size:
948 bases
Orientation:
Minus strand

Genomic View for LINC01628 Gene

Genes around LINC01628 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LINC01628 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC01628 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC01628 Gene

Proteins for LINC01628 Gene

Post-translational modifications for LINC01628 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC01628 Gene

Domains & Families for LINC01628 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC01628 Gene

Function for LINC01628 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC01628 Gene

Localization for LINC01628 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC01628 Gene

Pathways & Interactions for LINC01628 Gene

PathCards logo

SuperPathways for LINC01628 Gene

No Data Available
;

Gene Ontology (GO) - Biological Process for LINC01628 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LINC01628 Gene

Drugs & Compounds for LINC01628 Gene

No Compound Related Data Available

Transcripts for LINC01628 Gene

mRNA/cDNA for LINC01628 Gene

8 RNACentral transcripts :
1 REFSEQ mRNAs :
2 NCBI additional mRNA sequence :
1 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
4 NONCODE transcripts :
5 LncBook transcripts :
5 LNCipedia transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC01628 Gene

No ASD Table

Relevant External Links for LINC01628 Gene

GeneLoc Exon Structure for
LINC01628

Expression for LINC01628 Gene

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC01628 Gene

Orthologs for LINC01628 Gene

Evolution for LINC01628 Gene

ENSEMBL:
Gene Tree for LINC01628 (if available)
TreeFam:
Gene Tree for LINC01628 (if available)

No data available for Orthologs for LINC01628 Gene

Paralogs for LINC01628 Gene

No data available for Paralogs for LINC01628 Gene

Variants for LINC01628 Gene

Additional dbSNP identifiers (rs#s) for LINC01628 Gene

Structural Variations from Database of Genomic Variants (DGV) for LINC01628 Gene

Variant ID Type Subtype PubMed ID
esv2762259 CNV loss 21179565
esv3591134 CNV loss 21293372

Additional Variant Information for LINC01628 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC01628

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for LINC01628 Gene

Disorders for LINC01628 Gene

Additional Disease Information for LINC01628

No disorders were found for LINC01628 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC01628 Gene

Publications for LINC01628 Gene

  1. Three circulating long non-coding RNAs act as biomarkers for predicting NSCLC. (PMID: 26393913) Tang Q … Yin P (Cellular physiology and biochemistry : international journal of experimental cellular physiology, biochemistry, and pharmacology 2015) 2 3 54

Products for LINC01628 Gene

Sources for LINC01628 Gene