Aliases for LINC01625 Gene

Subcategory (RNA class) for LINC01625 Gene

lncRNA

Number of RNA Genes sources:

3 / 17

Aliases for LINC01625 Gene

  • Long Intergenic Non-Protein Coding RNA 1625 2 3 5
  • LINC01625 2 5 165
  • TCONS_00011139 2 3
  • NONHSAG044991.2 91
  • HSALNG0053881 164
  • HCG1786283 3

External Ids for LINC01625 Gene

Previous GeneCards Identifiers for LINC01625 Gene

  • GC06M139469

Summaries for LINC01625 Gene

GeneCards Summary for LINC01625 Gene

LINC01625 (Long Intergenic Non-Protein Coding RNA 1625) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LINC01625 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LINC01625 Gene

Genomics for LINC01625 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for LINC01625 Gene
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC01625 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for LINC01625 Gene

Genomic Locations for LINC01625 Gene
chr6:139,435,636-139,474,658
(GRCh38/hg38)
Size:
39,023 bases
Orientation:
Minus strand
chr6:139,790,132-139,795,733
(GRCh37/hg19)
Size:
5,602 bases
Orientation:
Minus strand

Genomic View for LINC01625 Gene

Genes around LINC01625 on UCSC Golden Path with GeneCards custom track
LINC01625 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
LINC01625 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC01625 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC01625 Gene

Proteins for LINC01625 Gene

Post-translational modifications for LINC01625 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC01625 Gene

Domains & Families for LINC01625 Gene

Gene Families for LINC01625 Gene

genes like me logo Genes that share domains with LINC01625: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC01625 Gene

Function for LINC01625 Gene

Phenotypes From GWAS Catalog for LINC01625 Gene

Phenotypes for LINC01625 Gene

genes like me logo Genes that share phenotypes with LINC01625: view

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC01625 Gene

Localization for LINC01625 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC01625 Gene

Pathways & Interactions for LINC01625 Gene

PathCards logo

SuperPathways for LINC01625 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LINC01625 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LINC01625 Gene

Drugs & Compounds for LINC01625 Gene

No Compound Related Data Available

Transcripts for LINC01625 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for LINC01625 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS000075EB79_9606 lncRNA 1690 5

HGNC: 52052,

RefSeq: NR_033919,

LncBook: HSALNT0114154,

LNCipedia: LINC01625:2,

NONCODE: NONHSAT115254.2,

URS0000EF6473_9606 lncRNA 4434 1

Ensembl: ENST00000668014 (view in UCSC) ,

URS0000EF1687_9606 lncRNA 4339 1

Ensembl: ENST00000666511 (view in UCSC) ,

URS0000EEC7A7_9606 lncRNA 1780 1

Ensembl: ENST00000665194 (view in UCSC) ,

URS0000EF15EF_9606 lncRNA 1732 1

Ensembl: ENST00000454788 (view in UCSC) ,

LINC01625 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for LINC01625 Gene

2 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC01625 Gene

No ASD Table

Relevant External Links for LINC01625 Gene

GeneLoc Exon Structure for
LINC01625

Expression for LINC01625 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for LINC01625

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC01625 Gene

Orthologs for LINC01625 Gene

Evolution for LINC01625 Gene

ENSEMBL:
Gene Tree for LINC01625 (if available)
TreeFam:
Gene Tree for LINC01625 (if available)

No data available for Orthologs for LINC01625 Gene

Paralogs for LINC01625 Gene

No data available for Paralogs for LINC01625 Gene

Variants for LINC01625 Gene

Additional dbSNP identifiers (rs#s) for LINC01625 Gene

Structural Variations from Database of Genomic Variants (DGV) for LINC01625 Gene

Variant ID Type Subtype PubMed ID
nsv518835 CNV loss 19592680

Additional Variant Information for LINC01625 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC01625

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for LINC01625 Gene

Disorders for LINC01625 Gene

No disorders were found for LINC01625 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC01625 Gene

Publications for LINC01625 Gene

  1. Seventy-five genetic loci influencing the human red blood cell. (PMID: 23222517) van der Harst P … Chambers JC (Nature 2012) 3
  2. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3
  3. The sequence of the human genome. (PMID: 11181995) Venter JC … Zhu X (Science (New York, N.Y.) 2001) 3

Products for LINC01625 Gene

Sources for LINC01625 Gene