Aliases for LINC01623 Gene

Subcategory (RNA class) for LINC01623 Gene

lncRNA

Number of RNA Genes sources:

3 / 17

Aliases for LINC01623 Gene

  • Long Intergenic Non-Protein Coding RNA 1623 2 3 5
  • LINC01623 2 5 165
  • XXbac-BPG308K3.6 3
  • NONHSAG043329.2 91
  • NONHSAG045628.2 91
  • NONHSAG045823.2 91
  • NONHSAG046339.2 91
  • NONHSAG045531.2 91
  • NONHSAG046525.2 91
  • NONHSAG046009.2 91
  • NONHSAG046172.2 91
  • HSALNG0049010 164

External Ids for LINC01623 Gene

Additional External Ids for LINC01623 Gene

Previous GeneCards Identifiers for LINC01623 Gene

  • GC06M028963
  • GC06M028972
  • GC06M028977
  • GC06M029053
  • GC06M028874
  • GC06M028882
  • GC06M028893
  • GC06M028902
  • GC06M028915
  • GC06M028924
  • GC06M028934
  • GC06M028948

Summaries for LINC01623 Gene

GeneCards Summary for LINC01623 Gene

LINC01623 (Long Intergenic Non-Protein Coding RNA 1623) is an RNA Gene, and is affiliated with the lncRNA class.

Rfam classification for LINC01623 Gene

Additional gene information for LINC01623 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for LINC01623 Gene

Genomics for LINC01623 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for LINC01623 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH06J028863 Promoter/Enhancer 2.5 EPDnew FANTOM5 Ensembl ENCODE CraniofacialAtlas dbSUPER 600.7 +0.6 585 4.6 ZNF221 RNF2 HNRNPL CREB1 GATAD2A TEAD4 PRDM10 ZNF629 TFE3 ZNF512 LINC01623 TRA-AGC2-2 piR-36242 ZSCAN12 ZKSCAN8 TRIM27 ZKSCAN3 ZSCAN9 ZSCAN23 ZKSCAN4
GH06J028862 Enhancer 0.7 ENCODE 0.7 +3.0 3029 0.2 ZNF24 ZBTB10 ZNF580 ZBTB17 BCOR ZNF395 ZNF384 GTF3C2 PHF20 CBX1 RPL13P TRA-AGC2-2 piR-36242 LINC01623 TRIM27 ZBED9
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC01623 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for LINC01623 Gene

Genomic Locations for LINC01623 Gene
chr6:28,859,625-28,865,888
(GRCh38/hg38)
Size:
6,264 bases
Orientation:
Minus strand
chr6:28,827,402-28,832,407
(GRCh37/hg19)
Size:
5,006 bases
Orientation:
Minus strand

Genomic View for LINC01623 Gene

Genes around LINC01623 on UCSC Golden Path with GeneCards custom track
LINC01623 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
LINC01623 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC01623 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

Proteins for LINC01623 Gene

Post-translational modifications for LINC01623 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC01623 Gene

Domains & Families for LINC01623 Gene

Gene Families for LINC01623 Gene

genes like me logo Genes that share domains with LINC01623: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC01623 Gene

Function for LINC01623 Gene

Phenotypes From GWAS Catalog for LINC01623 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC01623 Gene

Localization for LINC01623 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC01623 Gene

Pathways & Interactions for LINC01623 Gene

PathCards logo

SuperPathways for LINC01623 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LINC01623 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LINC01623 Gene

Drugs & Compounds for LINC01623 Gene

No Compound Related Data Available

Transcripts for LINC01623 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for LINC01623 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS0000759DBB_9606 lncRNA 2785 4

HGNC: 52050,

RefSeq: NR_033379,

LNCipedia: LINC01623:2,

NONCODE: NONHSAT108488.2, NONHSAT116304.2, NONHSAT116860.2, NONHSAT117208.2, NONHSAT117863.2,

URS000049D9EE_9606 lncRNA 560 4

Ensembl: ENST00000606624 (view in UCSC) ,

LncBook: HSALNT0103372,

LNCipedia: LINC01623:1,

NONCODE: NONHSAT208939.1,

URS00001DA979_9606 lncRNA 2458 2

Ensembl: ENST00000435625 (view in UCSC) , ENST00000440244 (view in UCSC) , ENST00000601878 (view in UCSC) , ENST00000608839 (view in UCSC) , ENST00000609169 (view in UCSC) ,

LNCipedia: LINC01623:4,

URS00000ADE17_9606 lncRNA 1260 2

Ensembl: ENST00000606727 (view in UCSC) ,

LNCipedia: LINC01623:3,

URS00008C0AF3_9606 lncRNA 2785 1

NONCODE: NONHSAT117554.2, NONHSAT118220.2,

LINC01623 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for LINC01623 Gene

2 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC01623 Gene

No ASD Table

Relevant External Links for LINC01623 Gene

GeneLoc Exon Structure for
LINC01623

Expression for LINC01623 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for LINC01623

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC01623 Gene

Orthologs for LINC01623 Gene

Evolution for LINC01623 Gene

ENSEMBL:
Gene Tree for LINC01623 (if available)
TreeFam:
Gene Tree for LINC01623 (if available)

No data available for Orthologs for LINC01623 Gene

Paralogs for LINC01623 Gene

No data available for Paralogs for LINC01623 Gene

Variants for LINC01623 Gene

Additional dbSNP identifiers (rs#s) for LINC01623 Gene

Structural Variations from Database of Genomic Variants (DGV) for LINC01623 Gene

Variant ID Type Subtype PubMed ID
esv3608463 CNV gain 21293372
nsv1074388 CNV deletion 25765185
nsv1122126 CNV deletion 24896259
nsv1145096 CNV deletion 24896259

Additional Variant Information for LINC01623 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC01623

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for LINC01623 Gene

Disorders for LINC01623 Gene

No disorders were found for LINC01623 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC01623 Gene

Publications for LINC01623 Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3

Products for LINC01623 Gene

Sources for LINC01623 Gene