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Aliases for LINC01623 Gene
Subcategory (RNA class) for LINC01623 Gene
lncRNA
Number of RNA Genes sources:
3 / 17
Aliases for LINC01623 Gene
External Ids for LINC01623 Gene
- HGNC: 52050
- Entrez Gene: 401242
- Ensembl: ENSG00000225595
Additional External Ids for LINC01623 Gene
Previous GeneCards Identifiers for LINC01623 Gene
- GC06M028963
- GC06M028972
- GC06M028977
- GC06M029053
- GC06M028874
- GC06M028882
- GC06M028893
- GC06M028902
- GC06M028915
- GC06M028924
- GC06M028934
- GC06M028948
Summaries for LINC01623 Gene
GeneCards Summary for LINC01623 Gene
LINC01623 (Long Intergenic Non-Protein Coding RNA 1623) is an RNA Gene, and is affiliated with the lncRNA class.
Rfam classification for LINC01623 Gene
-
tRNA
Additional gene information for LINC01623 Gene
No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for LINC01623 Gene
Genomics for LINC01623 Gene
GeneHancer (GH) Regulatory Elements Pubs
Promoters and enhancers for LINC01623 Gene
| GeneHancer (GH) Identifier | GH Type | GH Score |
GH Sources | Gene Association Score | Total Score | TSS distance (kb) | Number of Genes Away | Size (kb) | Transcription Factor Binding Sites |
Gene Targets |
|---|---|---|---|---|---|---|---|---|---|---|
| GH06J028863 | Promoter/Enhancer | 2.5 | EPDnew FANTOM5 Ensembl ENCODE CraniofacialAtlas dbSUPER | 600.7 | +0.6 | 585 | 4.6 | ZNF221 RNF2 HNRNPL CREB1 GATAD2A TEAD4 PRDM10 ZNF629 TFE3 ZNF512 | LINC01623 TRA-AGC2-2 piR-36242 ZSCAN12 ZKSCAN8 TRIM27 ZKSCAN3 ZSCAN9 ZSCAN23 ZKSCAN4 | |
| GH06J028862 | Enhancer | 0.7 | ENCODE | 0.7 | +3.0 | 3029 | 0.2 | ZNF24 ZBTB10 ZNF580 ZBTB17 BCOR ZNF395 ZNF384 GTF3C2 PHF20 CBX1 | RPL13P TRA-AGC2-2 piR-36242 LINC01623 TRIM27 ZBED9 |
- Elite GeneHancer and/or Elite GeneHancer-gene association
Download GeneHancer data from 2017 publication |
Request up-to-date GeneHancer data (full dataset)
GeneHancers around LINC01623 on the GeneHancer Hub at the UCSC Golden Path
Genomic Locations for LINC01623 Gene
Genomic Locations for LINC01623 Gene
- chr6:28,859,625-28,865,888
- (GRCh38/hg38)
- Size:
- 6,264 bases
- Orientation:
- Minus strand
- chr6:28,827,402-28,832,407
- (GRCh37/hg19)
- Size:
- 5,006 bases
- Orientation:
- Minus strand
Genomic View for LINC01623 Gene
Genes around LINC01623 on UCSC Golden Path with GeneCards custom track
LINC01623 in the GeneCards ncRNA compendium hub on the UCSC Golden Path
- Cytogenetic band:
-
- 6p22.1 by HGNC
- 6p22.1 by Entrez Gene
- 6p22.1 by Ensembl
LINC01623 Gene in genomic location: bands according to
Ensembl, locations according to GeneLoc
(and/or Entrez Gene and/or Ensembl if different)
Genomic Neighborhood
• Exon Structure
• Gene Density
RefSeq DNA sequence for LINC01623 Gene
Proteins for LINC01623 Gene
Post-translational modifications for LINC01623 Gene
No Post-translational modifications
Antibody Products
Protein Products
- Search Origene for Purified Proteins, MassSpec and Protein Over-expression Lysates for LINC01623
- Origene Custom Protein Services for LINC01623
No data available for DME Specific Peptides for LINC01623 Gene
Domains & Families for LINC01623 Gene
Gene Families for LINC01623 Gene
No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC01623 Gene
Function for LINC01623 Gene
Phenotypes From GWAS Catalog for LINC01623 Gene
Animal Model Products
- Taconic Biosciences: Generate A Custom CRISPR Mouse Model For Your Study
CRISPR Products
- Browse CRISPR knockouts for LINC01623
miRNA Products
Inhibitory RNA Products
Clone Products
No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC01623 Gene
Localization for LINC01623 Gene
No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC01623 Gene
Transcripts for LINC01623 Gene
Non-coding RNA (ncRNA) Transcripts from RNAcentral for LINC01623 Gene
| RNAcentral Transcript ID | Subcategory | Length (nts) | # of Sources | Source Identifiers and Annotations |
|---|---|---|---|---|
| URS0000759DBB_9606 | lncRNA | 2785 | 4 |
HGNC: 52050, RefSeq: NR_033379, LNCipedia: LINC01623:2, NONCODE: NONHSAT108488.2, NONHSAT116304.2, NONHSAT116860.2, NONHSAT117208.2, NONHSAT117863.2, |
| URS000049D9EE_9606 | lncRNA | 560 | 4 |
Ensembl: ENST00000606624 (view in UCSC) , LncBook: HSALNT0103372, LNCipedia: LINC01623:1, NONCODE: NONHSAT208939.1, |
| URS00001DA979_9606 | lncRNA | 2458 | 2 |
Ensembl: ENST00000435625 (view in UCSC) , ENST00000440244 (view in UCSC) , ENST00000601878 (view in UCSC) , ENST00000608839 (view in UCSC) , ENST00000609169 (view in UCSC) , LNCipedia: LINC01623:4, |
| URS00000ADE17_9606 | lncRNA | 1260 | 2 |
Ensembl: ENST00000606727 (view in UCSC) , LNCipedia: LINC01623:3, |
| URS00008C0AF3_9606 | lncRNA | 2785 | 1 |
NONCODE: NONHSAT117554.2, NONHSAT118220.2, |
LINC01623 in the GeneCards ncRNA compendium hub on the UCSC Golden Path
Additional transcripts not in RNAcentral for LINC01623 Gene
- 2 NCBI additional mRNA sequence :
CRISPR Products
- Browse CRISPR knockouts for LINC01623
miRNA Products
Inhibitory RNA Products
Clone Products
Relevant External Links for LINC01623 Gene
- GeneLoc Exon Structure for
- LINC01623
Expression for LINC01623 Gene
Transcriptomic regulation report from SPP (The Signaling Pathways Project) for LINC01623
No Expression Related Data Available
Primer Products
Gene Expression Assay Products
No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC01623 Gene
Orthologs for LINC01623 Gene
No data available for Orthologs for LINC01623 Gene
Paralogs for LINC01623 Gene
No data available for Paralogs for LINC01623 Gene
Variants for LINC01623 Gene
| Variant ID | Type | Subtype | PubMed ID |
|---|---|---|---|
| esv3608463 | CNV | gain | 21293372 |
| nsv1074388 | CNV | deletion | 25765185 |
| nsv1122126 | CNV | deletion | 24896259 |
| nsv1145096 | CNV | deletion | 24896259 |
Additional Variant Information for LINC01623 Gene
- SNPedia medical, phenotypic, and genealogical associations of SNPs for
- LINC01623
SNP Genotyping and Copy Number Assay Products
No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for LINC01623 Gene
Disorders for LINC01623 Gene
Additional Disease Information for LINC01623
No disorders were found for LINC01623 Gene.
No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC01623 Gene
Publications for LINC01623 Gene
- Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3
Products for LINC01623 Gene
- Browse OriGene Antibodies
- Custom Antibody Services
- Browse OriGene ELISA Kits
- Custom Assay Services
- Search Origene for Purified Proteins, MassSpec and Protein Over-expression Lysates for LINC01623
- Origene Custom Protein Services for LINC01623
- Browse OriGene Inhibitory RNA Products For LINC01623
- Browse OriGene qPCR primer pairs and template standards
- Browse CRISPR knockouts for LINC01623
- Custom cloning services - gene synthesis, subcloning, mutagenesis, variant library, vector shuttling
- Browse OriGene miRNA Products For LINC01623
- Browse Sino Biological cDNA Clones
- Browse Sino Biological Recombinant Proteins
- Browse Sino Biological Cell Lysates
- Browse Sino Biological Antibodies
- Browse Sino Biological Assays
- Browse ELISA Kits
- Browse CRO Services
- High-throughput Antibody Production Service
- Protein Production Service
- Epitope Tag Antibodies & Reporter Protein Antibodies
- Lentiviral ORF Clones
- Browse GeneCopoeia Cell Lines
- Search GeneCopoeia for knockout CRISPR/Cas9 clones, lentivirus, and/or AAV products for LINC01623
- Search GeneCopoeia for ORF cDNA, lentivirus, AAV viral particles, and/or promoter clone products for LINC01623
- Search GeneCopoeia for miRNA 3'UTR Target clone products for LINC01623
- Search GeneCopoeia for shRNA, lentivirus, and/or AAV clone products for LINC01623
Sources for LINC01623 Gene
- (1) GeneCards
- (2) HGNC
- (3) NCBI Entrez Gene
- (4) UniProtKB/Swiss-Prot
- (5) Ensembl
- (6) OMIM
- (7) GeneLoc
- (8) Gene Wiki
- (9) UCSC
- (10) PhosphoSitePlus
- (11) Cell Signaling Technology
- (12) GO
- (13) UniProtKB/TrEMBL
- (14) InterPro
- (15) ProtoNet
- (16) Blocks
- (17) MGI
- (18) IUBMB
- (19) KEGG
- (20) MINT
- (21) STRING
- (22) IntAct
- (23) Novoseek
- (24) PharmGKB
- (25) DrugBank
- (26) HMDB
- (27) ASD
- (28) SAGE
- (29) SOURCE
- (30) HomoloGene
- (31) PanEnsembl
- (32) euGenes
- (33) SGD
- (34) FlyBase
- (35) WormBase
- (36) Pseudogene
- (37) DGV
- (38) dbSNP
- (39) GenAtlas
- (40) HGMD
- (41) GAD
- (42) BGMUT
- (43) HuGE
- (44) Atlas
- (45) GenBank
- (46) HORDE
- (47) HUGE
- (48) IMGT
- (49) Leiden
- (50) miRBase
- (51) DME
- (52) OriGene
- (53) PubMed
- (54) R&D Systems
- (55) TGDB
- (56) Tocris
- (57) Abcam
- (58) Novus Biologicals
- (59) ProSpec
- (60) Sino Biological
- (61) GenScript
- (62) Qiagen
- (63) OCA
- (64) Proteopedia
- (65) MOPED
- (66) neXtProt
- (67) Reactome
- (68) GeneGo (Thomson Reuters)
- (69) DISEASES
- (70) SIMAP
- (71) GenomeRNAi
- (72) LifeMap
- (73) miRTarBase
- (74) MalaCards
- (75) Invitrogen
- (76) BitterDB
- (77) ESI-BIO
- (78) RefSeq
- (79) BioSystems
- (80) MaxQB
- (81) IUPHAR
- (82) BioGPS
- (83) Illumina
- (84) COMPARTMENTS
- (85) HOMER
- (86) PaxDb
- (87) ApexBio
- (88) Addgene
- (89) antibodies-online
- (90) CYP
- (91) NONCODE
- (92) TreeFam
- (93) PathCards
- (94) GeneReviews
- (95) GeneTex
- (96) Taconic Biosciences
- (97) GTEx
- (98) ProteomicsDB
- (99) SCBT
- (100) DGIdb
- (101) ClinicalTrials
- (102) RVIS
- (103) SIGNOR
- (104) diseasecard
- (105) NIH Rare Diseases
- (106) Orphanet
- (107) UMLS
- (108) GTR
- (109) Disease Ontology
- (110) Genetics Home Reference
- (111) MeSH
- (112) MedlinePlus
- (113) CDC
- (114) NINDS
- (115) NCBI Bookshelf
- (116) ClinVar
- (117) Gene Damage Index
- (118) HPO
- (119) UDN
- (120) VISTA
- (121) FANTOM5
- (122) ENCODE
- (123) ProSci
- (124) Horizon
- (125) The Signaling Pathways Project (SPP)
- (126) IID
- (127) VectorBuilder
- (128) SNPedia
- (129) BRCA Exchange
- (130) CIViC
- (131) ProteoGenix
- (132) dbSUPER
- (133) TISSUES
- (134) Gene ORGANizer
- (135) abm
- (136) Human Protein Atlas
- (137) GWAS Catalog
- (138) Monarch Initiative
- (139) DataMed
- (140) HumanCyc
- (141) UCNEbase
- (142) EPDnew
- (143) Applied Biosystems
- (144) GlyConnect
- (145) Aminode
- (146) GeneCopoeia
- (147) GPS-Prot
- (148) RNACentral
- (149) LncRNADisease
- (150) LOVD
- (151) miR2Disease
- (152) DiseaseEnhancer
- (153) Boster Bio
- (154) Biorbyt
- (155) Biocompare
- (156) Mastermind
- (157) CTD^2 Dashboard
- (158) CraniofacialAtlas
- (159) GeneImprint
- (160) Synthego
- (161) ENA
- (162) GtRNAdb
- (163) LncBase
- (164) LncBook
- (165) LNCipedia
- (166) Modomics
- (167) PDBe
- (168) Rfam
- (169) SILVA
- (170) snOPY
- (171) SRPDB
- (172) GENCODE
- (173) TarBase
- (174) Signalway Antibody
- (175) Open Targets Platform
- (176) 5SRRNADB
- (177) snoDB
- (178) MirGeneDB